Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0292 ATGGTTTGGACTGCCAATGATTTACAGGGATGGAAAGATTTTCCAAAGGGACTTAAGGTTCTTCTCCTTGATGGAGACATCAATTCTGTTGCTGAGACAAAAGCAAAGCTTGAGGCTATGGACTATAATGTTTCTTCCTTCAGCAATGAGAGTGCAGCCTTGTCAGCATTCTTAAATAGGCCTGAAGACTTCCACATTGCCGTAGTGGAGGTGAGTACAAGCAGTAGCCAGGGAGGTTTCAAGTTTCTTGAGAACGCCAAGGACTTGCCAACCGTTACGACTTCAAACAATCAGTGCTTGAGTACCATGATGAAGTGCATTGCGGTGCTTACTTGGCCTTGTCTTGCCATTGTCATCTTTTCCCTTAGCTGGGCTGACCTTCTGAGCAATCGAGATCAGATATTGTCCACCCGGTTATTGCTTGGTGCAGTTGAGTTCCTCAATAAACCCCTGTCGGAGGACAAGCTCAAAAATATCTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGAGAGTGTCCTGCCTGGATCACTAAAACCTGTCAAAGAATCTTTAGAATCCATGTTGCAGTGTCAAACAGAAAATGGACAACATGAAAACAAAATCTCTGTAGAATTAGATAATGTGTCCAGGTTAAGTGATAATGATCATAATCACTCTGCTGGAAGTGATAAATATCCTGCTCCTTCAACCCCACAATTAAAACAAGGAGAGCGGTTACTGAATGATGGTGATTACCAAGAGCACACTAATGGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGTGAATCTATGTCTGTCGACACTTCATGTGAGAATTTGAACACTGAAAATATTACTCAACTAAGGAAACCTGAAAAGACACTAATCAAAAGGGAAGATGGTTTTGCTGATGGTTGCAAGGGAGAGAGTGCTGTTTCTCTGAATCCTCGTAATAGAAAGTTTCTCAGCAAGACAGGTGGTAATACTACTACTCCAAATAAAGCGGGTGTTCCTAGAGATTCTTGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTCCAGGCAGTGGAACAGCTAGGTGTTGATCAAGCCATTCCCTCTAGAATATTGGAGCTAATGAAAGTTGATGGTTTGACTAGGCATAATGTGGCAAGCCATCTCCAGAAATATAGAATGCAAAAGAGACAAATTGTTCCTAGGGGAGAATGGGCAAATCATAGAGATCCGATCCAAAGGAGCTATGATGCACAAAGACCAATTATGTCCTACCCTCCATTTCATTCTAACCAGACCCATTATCCAGCTCATGTATATCCTATGTGGAGACAACCTGTAATCCAAACAGCTGGTGTACAGGTTTGGGGCCCTCCCGGTTATCCATTGTGTCAGCCTTTTCCCGGGGTTCACGCGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCACAAGCTTCTTGTTTTCCCTACACTCAAGCAAATAGTTTCACGAACCTACAGGATATGGTTGGATTGCAAAATGGCAAAGCAGTGGATTATAGATTTGGCATGCCACAAAATTCCTTTGAGCATCATCCGGCAGAAGAGGTTGTTGACAAGATTGTGAAGGAGGCAATGAGCAAACCATGGCTGCCCTTGCCCTTAGGTCTCAAACCTCCTTCGGCCGATAGTGTGTTGGCCGAGCTCTCAAAGCAAGGCATATCCAACATCCCTCTTTGA 1734 0.4412 MVWTANDLQGWKDFPKGLKVLLLDGDINSVAETKAKLEAMDYNVSSFSNESAALSAFLNRPEDFHIAVVEVSTSSSQGGFKFLENAKDLPTVTTSNNQCLSTMMKCIAVLTWPCLAIVIFSLSWADLLSNRDQILSTRLLLGAVEFLNKPLSEDKLKNIWQHVVHKAFNAGESVLPGSLKPVKESLESMLQCQTENGQHENKISVELDNVSRLSDNDHNHSAGSDKYPAPSTPQLKQGERLLNDGDYQEHTNGSTEKESGEHDGESMSVDTSCENLNTENITQLRKPEKTLIKREDGFADGCKGESAVSLNPRNRKFLSKTGGNTTTPNKAGVPRDSCEIKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVDGLTRHNVASHLQKYRMQKRQIVPRGEWANHRDPIQRSYDAQRPIMSYPPFHSNQTHYPAHVYPMWRQPVIQTAGVQVWGPPGYPLCQPFPGVHADAWGCPVLPPPQASCFPYTQANSFTNLQDMVGLQNGKAVDYRFGMPQNSFEHHPAEEVVDKIVKEAMSKPWLPLPLGLKPPSADSVLAELSKQGISNIPL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0292 577 MobiDBLite consensus disorder prediction 213 271 - -
Lal16g0292 577 ProSiteProfiles Response regulatory domain profile. 19 164 IPR001789 GO:0000160
Lal16g0292 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 109 - -
Lal16g0292 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 129 572 - -
Lal16g0292 577 MobiDBLite consensus disorder prediction 315 332 - -
Lal16g0292 577 Gene3D - 18 172 - -
Lal16g0292 577 Gene3D - 342 404 - -
Lal16g0292 577 SUPERFAMILY Homeodomain-like 345 402 IPR009057 -
Lal16g0292 577 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 346 400 IPR006447 GO:0003677
Lal16g0292 577 MobiDBLite consensus disorder prediction 242 268 - -
Lal16g0292 577 PANTHER TRANSCRIPTION ACTIVATOR GLK1 129 572 IPR044825 GO:0003700|GO:0045893
Lal16g0292 577 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 109 IPR044825 GO:0003700|GO:0045893
Lal16g0292 577 Pfam Myb-like DNA-binding domain 349 398 IPR001005 -
Lal16g0292 577 SUPERFAMILY CheY-like 16 166 IPR011006 -
Lal16g0292 577 MobiDBLite consensus disorder prediction 315 335 - -
Lal16g0292 577 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 343 402 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0292 Lal-Chr16 1734185 1739489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0292 1 576 Response Regulator Gene Family AT4G18020 45.799 2.66e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal16g0292 Myb_DNA-binding 3.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0292 - - gmx:100784905 771.541