Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0285 ATGTTCAATAACATGGGTTCCACGGTTCGTGAAAAACACATCAGAGCGAACCGCAAATCTCGATCGCAGAGAACGGATTCCAATTCCAATTCTCGTTGTAAGTCCATGTTGGATAATAATAAGCCTTGCAAACACCATGTTGATGCGGTTTCCAATGAATCTTCACAAAATCCCAATTCAATTCCAAATCCGAACCCTAATTTTGGTTCATCTGGATGGGGGTTATGCACTGAGGAACAATTGGAACAGATTCTGTCGAAAAACATGGAAAATATATACAAAGATGCTATCTCAAAGCTTGTTGCTTTAGGGTACGACAAGGACGTTGCCCTGAAAGCAATTCTGCAGAATGGTTATTGTCACAATGGAATGGATGTGTTAACGAACATTTTGCACAATGCTTTGGGTTATTTGAGTAATAATGATTCTGAGTCAGAGTCCGAGTTTGAGTCTCAGACTGTGTTCTCTGACTTGAAGCAGTTAGAGCGGTATACTCTAGCTGCTATTCTGTCTTTGTTTCAACAAGTGAGGCCCAATTTGAGTAGAGGTGATGCCATGTGGTGTTTGCTCGTCACTGATTTCCATGTAGAAAAGGCAGCCAACATTCAAATTCCGGTTCCCGATGGCAATGCAGTTGGGACTGGTAGCACTGATAATTTGAACAATATATTTGGTCTTATGCCTCCACCTCTATGTACGTTTCACGAGGGATGGGGGTTTGGGAATGGGGGAACCTCACAGATGGCTTTACAGTTACAAAGAGATATTGAACTCCCAAAGAGGTTTAATCTTTCACCTCAGATGAAGTCTTTGTTGAAAAGAAATGTTGCAATGTTCGCTGCTGGTTTTAGGGCTAACTCTAACCAGTCGCAGATACAACCCAAGGCTGTTCCCATCAGTGGTACTGCATCATCAAATTTGGAGTCTCCAGCTGAGAAGTCTGCTGACTCTCACAGTCTGAATAACCTAGATGCTGTGAACTCGGTACTGCTGAGTAAGTTTCCGAATCTAAATCTTGATGAGAAACTGGATTTTGTGGCTGAAGATAAGAAGGGTGAGGTAATAGTCACTCTGTTTCGTCAGATTAAGGATCTTGAGAAACAAGTCAAGGACCGAAAAGAATGGGCGCATCAGAAGGCAATGCAAGCAGCAAGAAAGCTGAACGGAGATCTTACTGAGCTGAAAACACTAAGGATGGAAAGAGACGAAACCCAAAAATTGAAGAAAGGGAAGCGGACGCTTGAGGATGCAACCATGAAGAGACTCTCAGAGATGGAGAATAACTTGAGAAAGGCTAGTGCTCAAGTGGACCAGGCAAATGCTGCTGTCAGAAAACTAGAGATAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCTAAGTTAAGTGCATCAGAGTCAGTCACGGCCTGCCTGCAAGTTGCAAAAAGGGAGAAAAAGTGTTTAAAGAGGCTTCTAGCATGGGAAAAACAGAAAGCTAAGCTGCAGCAGGAGATTTCTGATGAAAAACAGAAGATATCACAGATACAAGAAGAATTGGCTCGGATTAAACAGTGTGAAAAAGAAGCTGAGGTCAAGATGGGGGAGGAGTTGAAGGCCAAGGAGGAAGCATTAGCACTAATTGAGGAGGAACGCCGTGCTAAGCAAGCAGCTGAGGCTAATAATAAGAAATATCTTAAAGCTTTACGCCTGAATATAGAGATAGATTTCCAGCGTCACAAGGATGATCTCTTAATGCTTGAGCAGGAGCTGGCACGCCTTAAAGCATCTGCTCAGTCTGCTAATCTGCATCAAAAATCAAATACTTCGCGTACAAGTGAATCTGAGGGTGCTAAGCTCCAAAGAGAGGCAATTGCTAAGCTTGTTCAAGACTTCAAAAATATGGAGGACTTTTCAGAAAAAGAAGTCAGCGGTGATAGACAATGCATTATATGCAAGAAAGATGAAGTTTCAATTGTCCTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGCTGCAGTGAAGAGTATGGGAGAAAGGGAAGAGCTGCTTGTCCATGCTGCCGCGTTCCAATCGAACAGAGAATCCGTGTCTTTGGGGCAAGTTCGTAG 2091 0.4304 MFNNMGSTVREKHIRANRKSRSQRTDSNSNSRCKSMLDNNKPCKHHVDAVSNESSQNPNSIPNPNPNFGSSGWGLCTEEQLEQILSKNMENIYKDAISKLVALGYDKDVALKAILQNGYCHNGMDVLTNILHNALGYLSNNDSESESEFESQTVFSDLKQLERYTLAAILSLFQQVRPNLSRGDAMWCLLVTDFHVEKAANIQIPVPDGNAVGTGSTDNLNNIFGLMPPPLCTFHEGWGFGNGGTSQMALQLQRDIELPKRFNLSPQMKSLLKRNVAMFAAGFRANSNQSQIQPKAVPISGTASSNLESPAEKSADSHSLNNLDAVNSVLLSKFPNLNLDEKLDFVAEDKKGEVIVTLFRQIKDLEKQVKDRKEWAHQKAMQAARKLNGDLTELKTLRMERDETQKLKKGKRTLEDATMKRLSEMENNLRKASAQVDQANAAVRKLEIENAEIKAEMEASKLSASESVTACLQVAKREKKCLKRLLAWEKQKAKLQQEISDEKQKISQIQEELARIKQCEKEAEVKMGEELKAKEEALALIEEERRAKQAAEANNKKYLKALRLNIEIDFQRHKDDLLMLEQELARLKASAQSANLHQKSNTSRTSESEGAKLQREAIAKLVQDFKNMEDFSEKEVSGDRQCIICKKDEVSIVLLPCAHQVMCASCSEEYGRKGRAACPCCRVPIEQRIRVFGASS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0285 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 693 IPR013083 -
Lal16g0285 696 MobiDBLite consensus disorder prediction 591 612 - -
Lal16g0285 696 SUPERFAMILY RING/U-box 641 688 - -
Lal16g0285 696 PANTHER OS05G0141500 PROTEIN 5 695 IPR046934 -
Lal16g0285 696 SMART ring_2 642 681 IPR001841 -
Lal16g0285 696 MobiDBLite consensus disorder prediction 1 69 - -
Lal16g0285 696 Pfam Family of unknown function (DUF6592) 88 201 IPR046527 -
Lal16g0285 696 Coils Coil 415 463 - -
Lal16g0285 696 Pfam Zinc finger, C3HC4 type (RING finger) 639 687 - -
Lal16g0285 696 MobiDBLite consensus disorder prediction 23 37 - -
Lal16g0285 696 MobiDBLite consensus disorder prediction 49 69 - -
Lal16g0285 696 ProSiteProfiles Zinc finger RING-type profile. 642 682 IPR001841 -
Lal16g0285 696 MobiDBLite consensus disorder prediction 591 608 - -
Lal16g0285 696 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 695 - -
Lal16g0285 696 Coils Coil 485 526 - -
Lal16g0285 696 Coils Coil 531 561 - -
Lal16g0285 696 Coils Coil 570 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0285 Lal-Chr16 1700427 1703759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0285 580 692 C3H Transcription Factor Family AT1G73950 29.204 5.91e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0285 - - gmx:100777787 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0285 16 1700427 1703759 Lal15g0827 15 6117941 6123586 LSH
Lal16g0285 16 1700427 1703759 Lal23g1268 23 13773186 13776531 LSH
Lal16g0285 16 1700427 1703759 Lal15g0827 15 6117941 6123586 PCT
Lal16g0285 16 1700427 1703759 Lal23g0778 23 10297790 10303809 PCT
Lal15g0827 15 6117941 6123586 Lal16g0285 16 1700427 1703759 PCT
Lal23g0778 23 10297790 10303809 Lal16g0285 16 1700427 1703759 PCT