Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0284 ATGGATTCTCGAGAACAGCCACCTCATCACCCTAACGTTATGGTGGGACCCACCTCTTTCCCCAACACGATCCCACCTTCCATTATGGCCCCCGCCACCGCTCGATTCCCTTTCACCTCCATCTCCCACCACCACCACCAGCAGCCACCTCCTCCGCCCTCAAATAACAACAACTCTTCTTCCGAACCCTTCAACATCAACAACAACACCAACAACCACAGTGTCGTCCCTTACGAAGACGGTTCCTCTTCGGCATTGAAGCCGTGCGGGTTAACCGCCATTGACTCAGGCAAGAAGAAGAGAGGCCGTCCTAGGAAGTACTCACCTGACGCTGCTAACATTGCTTTAGGTTTGGCTCCCGCTGTAACGCAGCAAGTGTCTCCTCCTCCTTCTGGCGGCAGCTCCGCTCCCTCCACCGAACCTTTGGCCAAGAAACACAGGGGAAGACCACCGGGCTCTGGAAAGAAGCAGCTCGATGCGCTTGGAGCTGGCGGCACTGGTTTTACTCCTCATGTAATTTTCGTGGAGACTGGCGAGGACATTGCAGCAAAAGTTGTGGCATTTTCTCAAGAAGGACCTCGGACAGTTTGCATCCTTTCTGCTCATGGTGCAATCAGCAATATCACCCTTCAACAGCCAACAATGGCTGGGGGTACTGTCACATATGAGGTACTTTTAGGTTTTACATGCTTTTTAGGATGCATTCAATACCCATTTATAGGTCGTGAAATGGATCTTGTGACAGCATGCTATAGCTCCATAAGGATTCTGAGTGATGGCTTAGTGACCACTACAGATGGCAGTGGGCAGGGTTCTGAAGGCCTATTTGAAATTATATCTCTATCAGGTTCAACATTGGTATCTGAAAAGAGTAGTGGCCATAGCAAAATGGATGGCTTGAGTGTGTCCCTTGCAGGGTCTGATGGGCGAGTTTTAGGTGGCATAGTTGCTGGAAAGCTCACGGCTGCATCACAAGTACAGGTCATTGTCGGTAGCTTCATTGCTGAGCGCAAAAAATCTGGCTCAAACAACCTGAAATCTGGACCATCAGCACCATCACCCCAAATGTTAACTTTTGGTGCACCTGCAACTCCAACCAGTCCTACCTCTCAAGGGCCTTCATCTGATTCTTCTGATGACAATGATAATGGACCTGGTCTCTACAATAATGCTACTCAGCCTATTCATAATATGCCATTGTACCATCACCCATTATGGGCTGGCCAAACTCAGCAGTGA 1239 0.4956 MDSREQPPHHPNVMVGPTSFPNTIPPSIMAPATARFPFTSISHHHHQQPPPPPSNNNNSSSEPFNINNNTNNHSVVPYEDGSSSALKPCGLTAIDSGKKKRGRPRKYSPDAANIALGLAPAVTQQVSPPPSGGSSAPSTEPLAKKHRGRPPGSGKKQLDALGAGGTGFTPHVIFVETGEDIAAKVVAFSQEGPRTVCILSAHGAISNITLQQPTMAGGTVTYEVLLGFTCFLGCIQYPFIGREMDLVTACYSSIRILSDGLVTTTDGSGQGSEGLFEIISLSGSTLVSEKSSGHSKMDGLSVSLAGSDGRVLGGIVAGKLTAASQVQVIVGSFIAERKKSGSNNLKSGPSAPSPQMLTFGAPATPTSPTSQGPSSDSSDDNDNGPGLYNNATQPIHNMPLYHHPLWAGQTQQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0284 412 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 266 407 - -
Lal16g0284 412 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 15 224 - -
Lal16g0284 412 MobiDBLite consensus disorder prediction 340 395 - -
Lal16g0284 412 MobiDBLite consensus disorder prediction 123 163 - -
Lal16g0284 412 MobiDBLite consensus disorder prediction 124 138 - -
Lal16g0284 412 MobiDBLite consensus disorder prediction 58 79 - -
Lal16g0284 412 ProSiteProfiles PPC domain profile profile. 165 355 IPR005175 -
Lal16g0284 412 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 333 IPR005175 -
Lal16g0284 412 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 266 407 IPR039605 GO:0003680
Lal16g0284 412 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 224 IPR039605 GO:0003680
Lal16g0284 412 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Lal16g0284 412 SMART AT_hook_2 98 110 IPR017956 GO:0003677
Lal16g0284 412 Gene3D - 170 347 - -
Lal16g0284 412 MobiDBLite consensus disorder prediction 1 108 - -
Lal16g0284 412 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 335 - -
Lal16g0284 412 CDD DUF296 169 333 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0284 Lal-Chr16 1692669 1697061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0284 98 412 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 41.096 2.42e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0284 - - lang:109331997 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0284 16 1692669 1697061 Lal15g0218 15 1482052 1485015 LSH
Lal16g0284 16 1692669 1697061 Lal23g0782 23 10341101 10344652 PCT
Lal23g0782 23 10341101 10344652 Lal16g0284 16 1692669 1697061 PCT