Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal16g0282 | ATGGCAATGGCTCAGATCCAAATATTGTCACAATCTCAACACAACAAAAACCAACTTCATCCAAACCCGAACTCCACTAGTACTACTACCAAGTCATCTACTTGGATGTGGAATCCTAGGGAACACCTAGATGATGATGACTCATGGGAGGTTAGAGCTTTTGCTGAAGACACAAAGAACATCATGGGTACAACATGGCCTCCTAGGTCATACACTTGCACTTTTTGTAGAAGGGAGTTCCGGTCAGCCCAAGCTCTAGGCGGCCACATGAACGTGCACCGCCGTGACCGGGCACGCCTACACCAGGCGCCGTGTTCGGCCGGTTCTGTAAACCCCAACTCCTCTTATATTGCACCAGCATTCATAAATATTCCACCTCAGGAACTTGTTTCAAGTGCAGGGTTGTGCTTCCTCTCCCATTTTCCAAGCCCTAATGCCACCTTCACTACTGCTCTAAATCACATTCCTAATCGGAGTGCAAGTGGGAAATCTCCCTCCACTCTTCTCTCCATCTCTTCCTATTCAGTAAACAACTTGAAGCTTCAAACTTGCTCGCCAATATTTAACTTTCCGGCAGCACAAGCAGCTGCAGATGGGATCAATAATAATGTTTCTTCATGCTACAACAGTACTAGTAAAGTGGAAGAGCCTCCAACTTCTTCCAATGACAATGGCCAACATGAAGAGCTTGATCTAGAGCTCCGCCTGGGAAACAAGCCAACATCAACCTGA | 732 | 0.4672 | MAMAQIQILSQSQHNKNQLHPNPNSTSTTTKSSTWMWNPREHLDDDDSWEVRAFAEDTKNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPCSAGSVNPNSSYIAPAFINIPPQELVSSAGLCFLSHFPSPNATFTTALNHIPNRSASGKSPSTLLSISSYSVNNLKLQTCSPIFNFPAAQAAADGINNNVSSCYNSTSKVEEPPTSSNDNGQHEELDLELRLGNKPTST | 243 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal16g0282 | 243 | PANTHER | OS07G0101800 PROTEIN | 30 | 239 | - | - | |
Lal16g0282 | 243 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 98 | IPR013087 | - | |
Lal16g0282 | 243 | MobiDBLite | consensus disorder prediction | 209 | 225 | - | - | |
Lal16g0282 | 243 | Gene3D | Classic Zinc Finger | 61 | 116 | - | - | |
Lal16g0282 | 243 | Pfam | C2H2-type zinc finger | 71 | 95 | - | - | |
Lal16g0282 | 243 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
Lal16g0282 | 243 | PANTHER | OS07G0101800 PROTEIN | 30 | 239 | - | - | |
Lal16g0282 | 243 | MobiDBLite | consensus disorder prediction | 9 | 34 | - | - | |
Lal16g0282 | 243 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Lal16g0282 | 243 | MobiDBLite | consensus disorder prediction | 209 | 243 | - | - | |
Lal16g0282 | 243 | SUPERFAMILY | beta-beta-alpha zinc fingers | 68 | 98 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal16g0282 | Lal-Chr16 | 1685948 | 1686679 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal16g0282 | 32 | 240 | C2H2 Transcription Factor Family | AT4G17810 | 40.465 | 1.02e-36 | 125 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lal16g0282 | zf-C2H2_6 | 5.1e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal16g0282 | - | - | gmx:100818142 | 272.707 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal16g0282 | 16 | 1685948 | 1686679 | Lal16g0282 | 16 | 1685948 | 1686679 | ECH | |
Lal16g0282 | 16 | 1685948 | 1686679 | Lal15g0818 | 15 | 6005998 | 6006858 | LSH | |
Lal16g0282 | 16 | 1685948 | 1686679 | Lal15g1311 | 15 | 15032691 | 15036734 | PCT | |
Lal15g1311 | 15 | 15032691 | 15036734 | Lal16g0282 | 16 | 1685948 | 1686679 | PCT |