Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0282 ATGGCAATGGCTCAGATCCAAATATTGTCACAATCTCAACACAACAAAAACCAACTTCATCCAAACCCGAACTCCACTAGTACTACTACCAAGTCATCTACTTGGATGTGGAATCCTAGGGAACACCTAGATGATGATGACTCATGGGAGGTTAGAGCTTTTGCTGAAGACACAAAGAACATCATGGGTACAACATGGCCTCCTAGGTCATACACTTGCACTTTTTGTAGAAGGGAGTTCCGGTCAGCCCAAGCTCTAGGCGGCCACATGAACGTGCACCGCCGTGACCGGGCACGCCTACACCAGGCGCCGTGTTCGGCCGGTTCTGTAAACCCCAACTCCTCTTATATTGCACCAGCATTCATAAATATTCCACCTCAGGAACTTGTTTCAAGTGCAGGGTTGTGCTTCCTCTCCCATTTTCCAAGCCCTAATGCCACCTTCACTACTGCTCTAAATCACATTCCTAATCGGAGTGCAAGTGGGAAATCTCCCTCCACTCTTCTCTCCATCTCTTCCTATTCAGTAAACAACTTGAAGCTTCAAACTTGCTCGCCAATATTTAACTTTCCGGCAGCACAAGCAGCTGCAGATGGGATCAATAATAATGTTTCTTCATGCTACAACAGTACTAGTAAAGTGGAAGAGCCTCCAACTTCTTCCAATGACAATGGCCAACATGAAGAGCTTGATCTAGAGCTCCGCCTGGGAAACAAGCCAACATCAACCTGA 732 0.4672 MAMAQIQILSQSQHNKNQLHPNPNSTSTTTKSSTWMWNPREHLDDDDSWEVRAFAEDTKNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPCSAGSVNPNSSYIAPAFINIPPQELVSSAGLCFLSHFPSPNATFTTALNHIPNRSASGKSPSTLLSISSYSVNNLKLQTCSPIFNFPAAQAAADGINNNVSSCYNSTSKVEEPPTSSNDNGQHEELDLELRLGNKPTST 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0282 243 PANTHER OS07G0101800 PROTEIN 30 239 - -
Lal16g0282 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Lal16g0282 243 MobiDBLite consensus disorder prediction 209 225 - -
Lal16g0282 243 Gene3D Classic Zinc Finger 61 116 - -
Lal16g0282 243 Pfam C2H2-type zinc finger 71 95 - -
Lal16g0282 243 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lal16g0282 243 PANTHER OS07G0101800 PROTEIN 30 239 - -
Lal16g0282 243 MobiDBLite consensus disorder prediction 9 34 - -
Lal16g0282 243 SMART c2h2final6 71 93 IPR013087 -
Lal16g0282 243 MobiDBLite consensus disorder prediction 209 243 - -
Lal16g0282 243 SUPERFAMILY beta-beta-alpha zinc fingers 68 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0282 Lal-Chr16 1685948 1686679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0282 32 240 C2H2 Transcription Factor Family AT4G17810 40.465 1.02e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0282 zf-C2H2_6 5.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0282 - - gmx:100818142 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0282 16 1685948 1686679 Lal16g0282 16 1685948 1686679 ECH
Lal16g0282 16 1685948 1686679 Lal15g0818 15 6005998 6006858 LSH
Lal16g0282 16 1685948 1686679 Lal15g1311 15 15032691 15036734 PCT
Lal15g1311 15 15032691 15036734 Lal16g0282 16 1685948 1686679 PCT