Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0279 ATGGAGAAATTAAACACATCAGTAGATGCATCCACAACCAGCTGGTTAACTGATTTGGAAATAGAAGATTACAATTTGTTTCCAGAATACCATTTGAGCTTGCTTAATGTTGATGATATAGAGTTCCTTTCCCATGACATACCAAGTTCTTTGCATTCAGATGAGATGAGTTTGGAGAGACCCACCAAGCAGCTCAAAACAAATAGTTGGAACTCTTCCAATATCACTCAACATTTTTCACCTGACCTCTCCTCCTCTTCTCCTCCCACCACCACCACCACCACCACCACCACCACCACCTCCCATATTTTGTATTTTGAAAACTCAAACTCATCCCATGTCAACACCAACACCCTAAACCCAGAACAGAATGACCTTGTCTCAGTGTCACAGAAGCTGACACAAACAAGAAAAGGGACATCTGAAAACCAAAGCAAAGGTACTAAGAGGTCCTCTTCTCACGGTCATGATCACATCATTGCTGAGAGAAAACGAAGAGAGAATTTAAGCCAGAGCTTAATTGCTCTTGCAGCTCTCATTCCTGGCTTGAAAAAGATGGACAAGGCTTCAGTGCTTGGGGATGCCATAAAGTACATGAAAGATCTCAAAGAACGGTTGAGATTGTTGGAAGAAGAGAGTCACAAAAGAGTGGTAGAGTCTGTGGTCATTGCAAGAGTTTCAGACAACGAGGTGCTCCTTCGGATCCATTGCATTAAGCAAAAGGGTATTTTGGTCAAATTACTAGACCACATTCAAAAACTTCAACTTTTTGTTGTTAATAGCACTGTCCTACCTTTTGGGAAGAATTCTATTATTGACATAACCATCGTTGCTAAGGTAAACAAAATAATGGACAAATTAGTCCTTCGACTCTTTACAATAATATTTTTTATGTAG 897 0.4013 MEKLNTSVDASTTSWLTDLEIEDYNLFPEYHLSLLNVDDIEFLSHDIPSSLHSDEMSLERPTKQLKTNSWNSSNITQHFSPDLSSSSPPTTTTTTTTTTTSHILYFENSNSSHVNTNTLNPEQNDLVSVSQKLTQTRKGTSENQSKGTKRSSSHGHDHIIAERKRRENLSQSLIALAALIPGLKKMDKASVLGDAIKYMKDLKERLRLLEEESHKRVVESVVIARVSDNEVLLRIHCIKQKGILVKLLDHIQKLQLFVVNSTVLPFGKNSIIDITIVAKVNKIMDKLVLRLFTIIFFM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0279 298 Coils Coil 298 298 - -
Lal16g0279 298 Pfam Helix-loop-helix DNA-binding domain 158 202 IPR011598 GO:0046983
Lal16g0279 298 MobiDBLite consensus disorder prediction 132 158 - -
Lal16g0279 298 MobiDBLite consensus disorder prediction 132 148 - -
Lal16g0279 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 215 IPR036638 GO:0046983
Lal16g0279 298 Gene3D - 140 217 IPR036638 GO:0046983
Lal16g0279 298 PANTHER TRANSCRIPTION FACTOR NAI1 49 223 - -
Lal16g0279 298 PANTHER TRANSCRIPTION FACTOR NAI1 223 282 - -
Lal16g0279 298 MobiDBLite consensus disorder prediction 62 97 - -
Lal16g0279 298 SMART finulus 159 208 IPR011598 GO:0046983
Lal16g0279 298 Coils Coil 192 212 - -
Lal16g0279 298 PANTHER BHLH TRANSCRIPTION FACTOR 223 282 - -
Lal16g0279 298 PANTHER BHLH TRANSCRIPTION FACTOR 49 223 - -
Lal16g0279 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Lal16g0279 298 MobiDBLite consensus disorder prediction 52 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0279 Lal-Chr16 1669159 1670680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0279 12 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.395 2.00e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0279 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0279 - - gmx:100816551 233.032