Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0278 ATGACATCAACAGAGGAGGAATCATGGACAAGTTGGTTGTGTGATTTGGATACAGAAGACTACAGTTTCATCAATGAATCAGACATAATAAACATGGTTGAGGGAAGTTTGCCATCTCCGAATAATGATGTAGTCCCAACAATACAAGAGGAGAAATCAGAAAGCCAACTTTCTTATGCAACCTTCAACACTGAAAACTCCAGCACCATGAGCAATTGGGATGATAATAGTAGCAGTTTTGAGAGACCTGCCAAGGTACTGAAGATTAGCACCACTTCAAACACAGGTTACTTTTCACATAAAGACTCTACTCCCTCTTCCTATATTCTCTCCTTCAACAATGTGAATCCAGAACCAATATTACTGAGCACTGATCCAAATTTGAAGCCAAAAGGCAAGGTTGTGAATAAGACTTCAATGGGGTCTTTGGAAAATGAAAGGAATGAACCAAAACGCAATAATAATAATAATATTCAGGACGGAAGGAAGAAATGTGTCTCGGTGAACAGATCTCCTCAACACGCTCAAGATCACATAATTGCTGAGAGAATGAGAAGAGAAAGGATTAGTCACCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTTAAAAAGACAGACAAGGCCACAGTGCTTGGGGATGCTATAAAACACGTGAAAGAGCTCCAAGAACAAGTGAAAGTACTGGAAGATCAGGCCAAAAGAAAAAGGGTAGAATCAGTGATATATGTTGAGAAATGTAAGGTGTCTTCCTCGGAAGATGTCTCAGACACGTCGTCAAATTCTGGGGACGGAAACTGTGATGACCCTTCATCAAAAACAACTCGATCATTACCAGAAATCGAGGCAAGGGTGTCAGAGAAGAACGTGCTGATTCGGATCCACTGTGAGAAACAACAAGGAATTCTGATGAACATACTCAAAGAGATAGAGAAGCTTCATCTCTCAGTTATCAATAGCAGTGCATTGCCTTTTGGGACTTCCATTATGGACATAACCATCATAGCAGAGATGGATGGTGATTTCAGCTTGAGCGTGAAGGAGGTAGCTAGAAGCCTGAGAGAGGGACTGTTGCAATGTAATAGTAGCTAA 1092 0.4112 MTSTEEESWTSWLCDLDTEDYSFINESDIINMVEGSLPSPNNDVVPTIQEEKSESQLSYATFNTENSSTMSNWDDNSSSFERPAKVLKISTTSNTGYFSHKDSTPSSYILSFNNVNPEPILLSTDPNLKPKGKVVNKTSMGSLENERNEPKRNNNNNIQDGRKKCVSVNRSPQHAQDHIIAERMRRERISHQFIALSALIPGLKKTDKATVLGDAIKHVKELQEQVKVLEDQAKRKRVESVIYVEKCKVSSSEDVSDTSSNSGDGNCDDPSSKTTRSLPEIEARVSEKNVLIRIHCEKQQGILMNILKEIEKLHLSVINSSALPFGTSIMDITIIAEMDGDFSLSVKEVARSLREGLLQCNSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0278 363 PANTHER BHLH TRANSCRIPTION FACTOR 3 358 - -
Lal16g0278 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 239 IPR036638 GO:0046983
Lal16g0278 363 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 358 - -
Lal16g0278 363 SMART finulus 179 228 IPR011598 GO:0046983
Lal16g0278 363 MobiDBLite consensus disorder prediction 144 158 - -
Lal16g0278 363 MobiDBLite consensus disorder prediction 123 176 - -
Lal16g0278 363 CDD bHLH_AtNAI1_like 174 246 - -
Lal16g0278 363 Gene3D - 169 236 IPR036638 GO:0046983
Lal16g0278 363 MobiDBLite consensus disorder prediction 253 277 - -
Lal16g0278 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Lal16g0278 363 Coils Coil 212 239 - -
Lal16g0278 363 MobiDBLite consensus disorder prediction 159 174 - -
Lal16g0278 363 Pfam Helix-loop-helix DNA-binding domain 177 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0278 Lal-Chr16 1663571 1666241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0278 10 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.723 4.41e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0278 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0278 - - lang:109348843 624.009