Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0268 ATGCCTATGTATCAGCCTTGTAAGAGGAACATGGTTGTTGTTGGGTTTGAGGGTGGTGGTGAAGGCCATATTCTAGATCTGGATACCGCAGTCAAAGATGGTATTTTGGGTGGTGTTGTTGGAACCGGGGTTTGTGACAAATTGGATCTTAGAAAAATGATTGAAGAGCTTGACTTGTCTGATGTTCCAACTGTCTTCATTTGCCCAATCTCTCTTGAAACAATGCAAGACCCTGTGACCCTTTGCACTGGCCAAACCTATGAGAGGTCTAACATTCTCAAATGGTTCAGTTTGGGGCACTTTACATGCCCCACTACAATGCAAGAGCTTTGGGATGATTCAATTACTCCAAACACCACCCTTCACCGCTTGATTTACACTTGGTTCTCTCAGAAGTACATGCTCATTAAGAAGAGATCAGAGGATGTGCAGGGAAGGACTTTGGAGCTTCTGGAAACGCTGAAAAAGGTTAAGGGTCAAGCTAGAGTTCAAGCACTTAAGGAACTTCACGATGTTGTGTCTGCTCATTCCACTGCCCGAAAGTCCGTGATTGATCAAGGTGGAGTATCTATTATGTCCTCATTACTTGGGCCTTTTACTTCACATGTTGTTGGTTCCGAAGTCATTGGTATTCTTGTAAGTTTGACACTTGATTCAGAATCCAAAAAGAATCTAATGCAGCCTGCTAAAATTTCATTGATGGTGGATATCTTAAATGAGGGTTCAATTGAGACTAAAATCAATTGCACACGACTAATGGAATCATTAATTGATGATAAGGATTTTCAGGGTGAGATTATTTCAAGCCATAGCCTCTTGGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGAAGAAGCAATGGAATCTGTTCAGGACTAAGTCTTCTTAAAACAATATCATTGCACAAAGAAGTTAGGAACTTGCTAGTGAGTATCGGGGCTGTTTCTCAATTGGTTGAATTGTTATCTGGTTTAGACCCTAATTGTTTGGAATTAGCACTTTGTGTTTTAGATGCATTGGCATCTATACCTGAAGGCAGAGTAGCTTTGAAGGATTGTTCTAACACCATAGCCATCATGGTGAAACTGTTGATGAGGATCTCAGAAAATTGCACCCAATATGCATTGTCAATCCTATGGTCTGTGTGCAAGCTTTCACCAGAGGAGTGCTCATCCATTGCCGTGGATGCAGGGCTTGCTGCAAAACTTCTTCTTGTTATTCAAAGTGGTTGCAATCCTGTTTTAAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCGGATACCATCTTCATTTCCAAGTGCAAGCTCACCAGAACCATTCAATGA 1341 0.4131 MPMYQPCKRNMVVVGFEGGGEGHILDLDTAVKDGILGGVVGTGVCDKLDLRKMIEELDLSDVPTVFICPISLETMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLHRLIYTWFSQKYMLIKKRSEDVQGRTLELLETLKKVKGQARVQALKELHDVVSAHSTARKSVIDQGGVSIMSSLLGPFTSHVVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLMESLIDDKDFQGEIISSHSLLVGLMRLVKDKRRSNGICSGLSLLKTISLHKEVRNLLVSIGAVSQLVELLSGLDPNCLELALCVLDALASIPEGRVALKDCSNTIAIMVKLLMRISENCTQYALSILWSVCKLSPEECSSIAVDAGLAAKLLLVIQSGCNPVLKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0268 446 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Lal16g0268 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Lal16g0268 446 SUPERFAMILY ARM repeat 152 431 IPR016024 -
Lal16g0268 446 SUPERFAMILY RING/U-box 56 132 - -
Lal16g0268 446 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Lal16g0268 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 36 445 - -
Lal16g0268 446 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Lal16g0268 446 Gene3D - 135 441 IPR011989 -
Lal16g0268 446 PANTHER WDSAM1 PROTEIN 36 445 IPR045185 GO:0061630
Lal16g0268 446 CDD RING-Ubox_PUB 66 108 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0268 Lal-Chr16 1602417 1603757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0268 1 446 U-box Gene Family AT3G49810 73.051 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0268 - - gmx:100779827 763.066