Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0256 ATGGAGAGTTATCTAAATGAAAATTTTGGAGGAGTTAAGGCTAAGAACTCATCTGAAGAGGCTCTTCAAAGATGGAGGAAACTATGTGGACTTGTCAAGAACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTTTCCAAAAGGGAAGAAGCTGCTGCTATGCGTCGAACCAATCAGGAGAAGCTAAGGGTAGCAGTTCTGGTTTCTCAAGCTGCACTTCAATTTTTGCAAGGCGTGCAACCAAGCAATTACATTGTGCCTGATGAAGTGGAAGCTGCTGGTTTTCAAATCTGTGGTGATGAATTGGGGTCTATTGTTGAAGGCCATGATGTGAAAAAACTCAAAGTTCATGGTGGGGCTAATGGGATCGCAGAAAAACTTTCTACATCCACCACTGAAGGGCTAAGAAGTGAACCTGGTTTACTGAGCAAGAGACAACAAATATACGGAATCAACAAATTTACTGAAATTGCAGCTAAGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATACTTGCAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCATTGCAACTGAAGGCTGGCCCAAGGGGGCTCATGATGGACTTGGAATTGTTGCAAGTATCTTACTGGTTGTCTTTGTAACAGCAACAAGTGATTATCGCCAATCATTGCAATTCAAGGATTTAGACAAGGAGAAGAAGAAGATTTCCATTCAGGTCACAAGAGATAGTTATAGGCAGAAAATGTCAATATATGAATTACTCCCTGGTGATATTGTGCATCTTGGCATCGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAGCCAGTGATGGTGAGTTCTGAAAATCCATTTCTCCTTTCTGGAACCAAGGTCCAAGATGGAACATGCAAAATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAGCTGATGGCTACTCTCAGTGAAGGTGGAGAAGATGAAACTCCATTGCAAGTAAAATTGAATGGAGTAGCAACCATTATTGGGAAGATAGGCCTATTCTTTGCAGTGATTACTTTTGCAGTTCTAGTGCAAGGACTAGTGAGCCATAAACTCCAACAAGGAAAGTTATGGAGCTGGGATGGGGATGATGCATTGGAGATGTTGGAATTCTTTGCTATTGCAGTTACCATAGTTGTTGTTGCTGTTCCGGAGGGACTTCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAGAAAATGATGAATGACAAAGCCCTTGTCAGACATTTGGCAGCGTGTGAGACTATGGGATCAGCCACAACTATTTGCAGTGACAAGACTGGGACACTAACAACCAACCACATGACTGTTGTGAAAACATGCATTTGTTTGAATGACAAAGAGGTGAGCAACAAGGCTTGTAGCTTAAACTCTGAACTCCCACCTTCTGCTGTGAAACTGCTGCAACAGTCAATATTCAATAATACAGGAGGAGAAGTGGTGATTAATAAAGAAGGAAAACATGAGATTTTAGGGACTCCGACTGAGACTGCAATATTGGAGTTTGGATTGTCCCTAGGTTCCAACTTTCAAGCAGAGCGACAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGAGTGTAGTGGTGGAGCTCCCAGGGGGAGGATTACGAGCACACTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAGGTTCTTAACTCAAATGGCGAGGTTGTCCCTCTTGATGAAGAATTGTGTAACCGTCTTCAGACTACAATAAACCAGTTTGCTAATGAGGCACTAAGAACTCTGTGCCTTGCTTATATGGAATTGGAAAACGGGTTCTCTGCTGAAGATCCTATTCCTGTTTCGGGTTATACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTAGCTCAATGCCGTTCTGCAGGAATAACAGTAAGGATGGTTACAGGAGACAATATTAATACTGCTAAGGCTATAGCCAGAGAATGTGGGATTTTGACAGATGATGGCATAGCCATTGAAGGTCCAGAATTTAGAGAGAAGAGTCTAGAGGAATTGTTGGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCTTCACCTTTAGACAAACATATGTTGGTGAAACACCTGCGTACTACATTTGGGGAAGTTGTAGCTGTAACTGGCGATGGAACAAATGATGCCCCAGCCCTTCATGAAGCTGACATTGGGCTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGCGCAGATGTCATAATTCTTGATGACAACTTCTCCACAATAGTGACTGTGGCCAAATGGGGACGATCAGTTTACATAAATATTCAGAAATTCGTACAGTTCCAGCTGACTGTTAATGTGGTAGCATTAATAGTGAACTTTGTATCAGCCTGTGTGACTGGAACTGCACCACTAACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTAGGAGCACTTGCACTTGCAACTGAACCTCCAAATGATGATTTAATGAAGCGCTCACCTGTTGGAAGGAAGGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTGGGACAATCATTGTATCAGTTTATGGTGATATGGTTTCTGCAGGCAAAAGGAAAATCCATATTTTCCCTTAATGGTGCTGATTCGGATGTGATCTTAAACACACTTATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCGCGTGAGATGGAGGAAATAGACGTTTTCAAAGGCATATTCGATAATTATGTTTTCGCTGCTGTCCTTAGTGTCACTGTTTTATTTCAAATCATTATAGTTGAGTACTTGGGAACCTTCGCAAACACAACACCTCTCACTCTGGCACAGTGGTTCTTTAGCTTATTGGTTGGATTTCTAGGCATGCCTATTGCTGCACAATTAAAGAAGATCCCAGTTTGA 3045 0.419 MESYLNENFGGVKAKNSSEEALQRWRKLCGLVKNPKRRFRFTANLSKREEAAAMRRTNQEKLRVAVLVSQAALQFLQGVQPSNYIVPDEVEAAGFQICGDELGSIVEGHDVKKLKVHGGANGIAEKLSTSTTEGLRSEPGLLSKRQQIYGINKFTEIAAKSFWVFVWEALQDMTLMILAVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRDSYRQKMSIYELLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSSENPFLLSGTKVQDGTCKMLITTVGMRTQWGKLMATLSEGGEDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLVSHKLQQGKLWSWDGDDALEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICLNDKEVSNKACSLNSELPPSAVKLLQQSIFNNTGGEVVINKEGKHEILGTPTETAILEFGLSLGSNFQAERQACKLVKVEPFNSTKKRMSVVVELPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEELCNRLQTTINQFANEALRTLCLAYMELENGFSAEDPIPVSGYTCIGVVGIKDPVRPGVKESVAQCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEELLELIPKIQVMARSSPLDKHMLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFVSACVTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQAKGKSIFSLNGADSDVILNTLIFNTFVFCQVFNEINSREMEEIDVFKGIFDNYVFAAVLSVTVLFQIIIVEYLGTFANTTPLTLAQWFFSLLVGFLGMPIAAQLKKIPV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0256 1014 SFLD p-type atpase 435 805 IPR044492 -
Lal16g0256 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Lal16g0256 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g0256 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g0256 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g0256 1014 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Lal16g0256 1014 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Lal16g0256 1014 Pfam Cation transporter/ATPase, N-terminus 118 185 IPR004014 -
Lal16g0256 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 2 1013 - -
Lal16g0256 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Lal16g0256 1014 Pfam E1-E2 ATPase 237 431 - -
Lal16g0256 1014 Gene3D - 143 336 - -
Lal16g0256 1014 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Lal16g0256 1014 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Lal16g0256 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Lal16g0256 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Lal16g0256 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Lal16g0256 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Lal16g0256 1014 Gene3D - 17 77 - -
Lal16g0256 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Lal16g0256 1014 PANTHER CATION TRANSPORTING ATPASE 2 1013 - -
Lal16g0256 1014 Gene3D - 168 1002 - -
Lal16g0256 1014 Gene3D - 463 657 IPR023299 GO:0000166
Lal16g0256 1014 SFLD C1.7: P-type atpase like 435 805 - -
Lal16g0256 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lal16g0256 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Lal16g0256 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1013 IPR023298 -
Lal16g0256 1014 SUPERFAMILY HAD-like 451 858 IPR036412 -
Lal16g0256 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 724 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g0256 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 395 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g0256 1014 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Lal16g0256 1014 Gene3D - 450 798 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0256 Lal-Chr16 1532569 1541867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0256 1 1014 Primary Pumps ATPases AT4G37640 81.773 0.0 1714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0256 K01537 - gmx:100792691 1782.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0256 16 1532569 1541867 Lal16g1323 16 9390232 9396511 PCT
Lal16g1323 16 9390232 9396511 Lal16g0256 16 1532569 1541867 PCT