LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0254	ATGAAAGCCTCCACCTTCTTTATTATTATCCTTATCACTATTACCACATCGTCTCTATCATTCGCAAAAGGACTCAACACTATTCAATTCCAATTCCACACCTTCAATTCAACTAATGAATCTCACTCTAGAAGAATCCTCCACCAACCATTGTTCCCTGAGAGTTCTATTCCACCACCATCAACCACCGAGTCGCCGCCGACCGAAACAGAGACTCCTCCTTCTTCTGACGCTAACATTCCATTCTTCTACGAGAATCCACCTGGACCACCACCCCCTCAATTAGAACCTATAACTTCTAACGCTACACTCTCGAATTCGAACCCAACGCAACCTAACAAGGGAACGAAGAAAGTTGCGATTGCGATATCCGTTGGAATTGTGACTCTTGGAATGTTAACTGCACTTGCGTTCTTCTTGTACAAGCACAAAGCTAAACACCAAGTGGAAACTCAGAAGCTAGTGGCTCGGGACCCGAACCCGAACCTGGAGGATTCGAGGGCCCCACCATCGTCTAGCATTCTCTACATTGGAACAGTTGAGCCAACGAGAACGGAACCAAACAGGTCGCCGTATCAGAAGCTCAATTCCGTTAAGCGATCAGAACGGTACCGTCCAAGTCCCGAGTTGCATCCACTGCCGCCGTTGAGAAGGCCTCCTTCCGCTGTGAATTACCCGCCTGCGGCTTCTCCGTCATCTTCCGATGAAGAAAGTCACGCCACGACAGCGTTTCATTCGCCGCAAAACTCGTCGGTGAGTTACGATGAAGGGTATTACACGCCGGTTTCACGTCAGAGTTCTCTCGTTAAAAGTAGCCCCGCCGCCGCCGCACCACCACCACCTCCTCCTCCGGTTCCGTTCTCGAAGAGAACTTCCCCGAAGTCCCGGGTTTCGGCTTCCTCGCCGGATATTAGGCATATCATAATTCCATCTATAAAGAAGGCTCCGCTGCCGCCGCCTCCGGCACCAGCACCACCTGATAAACAAGTGAATTCATCAAGTTCTAGAAGACCAAAGTTTTCAGCACCTCCCCCAGCTCCGAATTTAACGCATCTTCGATCACCAATCAACAAAGCCACGAAGGTTTCTAGGAATGTACTCAATGCTCCTCCTCCGCCACCTCCACCGCCTCCTCCACCACCGAGAAAAAAAGACTCTCCAGTCGTTAGTGTTTCATCGACACGTGAATCAAGAAAGGAGAAATCTTGTAGTCCAAGTGAAGAAGGTGATAGTAGCGTAAAAAAAGACTCACCTTCAGAGAACGTTGATAAAAGAAGTGTGAATGGTGGTCGAAGGTGTTCTGAGGAGAGGTTGGAAGAGAATGAGAAACCAAAGTTGAAAGCTTTACATTGGGACAAAGTTCGAGCAACCTCTGACCGTGACACTGTGTGGGACCACCTTAAATCTAGCACCTTTCCATTAAATGAGGACATGATGGAGTCCTTGTTTGGCTGCAACGCCACAACTTCTTTACCTAAAGAACCTCCAAGAAAGTCTGTTATCCCTTCCATTGATAAGGAGAATAGGGTTTTAGACCCCAAGAAGTCTCAAAACATAGCTATACTAATAAGGGCACTCAATGTCACAAGAGATGAGGTGTCAGAAGCTCTTTTAGATGGGAATCCAGAAGGTTTGGGTGCTGAACTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAAGAACTATGATGGTGACCTATCAAAACTTGGATCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTCGCATTTAAAAGAGTTGAAGCTATGCTGTATAGGGCCAACTTTGATGCCGAAGTTAACTACCTTAGAAAGTCTTTTCAAACCTTAGAGGCAGCAAGTGAGGAATTAAGGAATAGCCGATTGTTCTTCAAACTCCTTGAAGCTGTTCTAATGACAGGAAACAGAATGAACGTTGGCACCAATCGAGGTGATGCTAAATCATTTAAACTAGACACACTCTTAAAACTTGTAGATATTAAAGGAGCAGATGGAAGGACTACATTGCTCCACTTTGTGGTCCAAGAGATTATTAGATCTGAAGGTGCAGGTGGTGAATCTGCAAATGAGAATGTCAAGGGCCAAATGAGTTCCAATTTTAACGAAGATGAGTTTAAGAAGCAAGGATTGCAGGTTGTCGCTGGACTCGGTAGAGACCTTAGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCTTGAGCAGCTACCTTCTAAAGCTTGAAACAGGGCTTGATAAAGTGCGATTGGTTTTGCAATATGAGAAGCCAGACATGCAAGGGAATTTCTTCAAGTCCACAAAGCTATTCCTGAGAGATGCCGAAGATGAAATTGTTAGGATTAAGGCTGATGAGAGAAATACCTTATTTCTTGTGAAAGAAGTTACACAATACTTTCACGGTGATGCAGCAAAGGAAGAAGCTCACCCTTTCAGAGTTTTTATGATTGTAAGAGACTTTCTAAATATTCTTGATCAGGTGTGCAAAGAAGTGGGAAAGATGCATGATAGAATTGTTGGTGGTTCTTCCCGATCCTTCCGCATAGCTGCAAGTGCATCATTGCCTGTTCTCAACAGGTACAATGCAAGACAGGATAGAAGCTCTGATGAGGAAAGCTCATCTCCCTAG	2655	0.4505	MKASTFFIIILITITTSSLSFAKGLNTIQFQFHTFNSTNESHSRRILHQPLFPESSIPPPSTTESPPTETETPPSSDANIPFFYENPPGPPPPQLEPITSNATLSNSNPTQPNKGTKKVAIAISVGIVTLGMLTALAFFLYKHKAKHQVETQKLVARDPNPNLEDSRAPPSSSILYIGTVEPTRTEPNRSPYQKLNSVKRSERYRPSPELHPLPPLRRPPSAVNYPPAASPSSSDEESHATTAFHSPQNSSVSYDEGYYTPVSRQSSLVKSSPAAAAPPPPPPPVPFSKRTSPKSRVSASSPDIRHIIIPSIKKAPLPPPPAPAPPDKQVNSSSSRRPKFSAPPPAPNLTHLRSPINKATKVSRNVLNAPPPPPPPPPPPPRKKDSPVVSVSSTRESRKEKSCSPSEEGDSSVKKDSPSENVDKRSVNGGRRCSEERLEENEKPKLKALHWDKVRATSDRDTVWDHLKSSTFPLNEDMMESLFGCNATTSLPKEPPRKSVIPSIDKENRVLDPKKSQNIAILIRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVNYLRKSFQTLEAASEELRNSRLFFKLLEAVLMTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGADGRTTLLHFVVQEIIRSEGAGGESANENVKGQMSSNFNEDEFKKQGLQVVAGLGRDLSNVKKAAAMDSDVLSSYLLKLETGLDKVRLVLQYEKPDMQGNFFKSTKLFLRDAEDEIVRIKADERNTLFLVKEVTQYFHGDAAKEEAHPFRVFMIVRDFLNILDQVCKEVGKMHDRIVGGSSRSFRIAASASLPVLNRYNARQDRSSDEESSSP	884

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	152	441	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	208	226	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	98	115	-	-
	Lal16g0254	884	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	436	859	IPR015425	-
	Lal16g0254	884	PANTHER	FORMIN-LIKE PROTEIN	4	884	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	53	67	-	-
	Lal16g0254	884	PANTHER	FORMIN-RELATED	4	884	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lal16g0254	884	Pfam	Formin Homology 2 Domain	439	833	IPR015425	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	394	441	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	367	385	-	-
	Lal16g0254	884	SMART	it6_source	436	848	IPR015425	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	165	195	-	-
	Lal16g0254	884	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	371	844	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	313	327	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	227	272	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	51	115	-	-
	Lal16g0254	884	MobiDBLite	consensus disorder prediction	274	289	-	-
	Lal16g0254	884	Gene3D	Formin, FH2 domain	433	844	IPR042201	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0254	Lal-Chr16	1523382	1528161	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g0254	385	874	FH2 protein (formin) Gene Family	AT5G67470	66.734	0.0	641

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0254	-		-	gmx:100798670	982.63

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0254	16	1523382	1528161	Lal15g1310	15	15026419	15034156	LSH
	Lal16g0254	16	1523382	1528161	Lal23g1297	23	13964165	13968807	LSH
	Lal16g0254	16	1523382	1528161	Lal15g1310	15	15026419	15034156	PCT
	Lal16g0254	16	1523382	1528161	Lal16g1324	16	9397001	9402008	PCT
	Lal15g1310	15	15026419	15034156	Lal16g0254	16	1523382	1528161	PCT
	Lal16g1324	16	9397001	9402008	Lal16g0254	16	1523382	1528161	PCT