Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0250 ATGAGTTGTAACGGGTGCAGAGTCCTTCGCAAGGGTTGCAGTGAGTCATGTATTTTACGCCCTTGTTTACAGCTTATCGACACTGCTGAAGCCCAAGGCTATGCCACTGTTTTCGTAGCCAAATTTTTCGGCCGTGCTGGTCTCATGTCTTTCATTTCCAACGTCCCTGAAACCCAACGACCTGCGTTGTTTCAATCTCTCTTGTTCGAAGCTTGTGGAAGAACGGTTAACCCTGTAAATGGTGCCGTTGGACTTCTCTGGACTGGAAATTGGCACGTGTGCCAGTCGGCGGTTGAGACCGTGCTCCGTGGTGGTACCCTGAGGCCCATGCCGGAGCTTCTCGCCCTTGACGCGCCCACTCACGTCGCCGACGATGCATCGGAAGGTGAAGTTACTTGCACCGACATGTGGAGGTTGCGAGATCCGAACCCGAATTTCCGGTTCACCAGTTCGCGGTCTAAGGTTACTTCCGCCGTAAAACGCAAGCGGTCGGAGGAAATCGCTGATCTTAATCTCCGATTGACTCCAAGTTTTGTTCAGAATTCTCCGCCGTACAGTTGCCGACGAGATATTCGCCGGCCTGGTACGCCGTCGATGAATTCGGAGGAATCCGTCACAACTACGGCGTGCTTGGATAGTGGGCTCGTAGATCGTTACGCTCCCGGCGGAGAGAGAAAAGTCCTCAACCTTTTCATTTGA 699 0.5293 MSCNGCRVLRKGCSESCILRPCLQLIDTAEAQGYATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQSAVETVLRGGTLRPMPELLALDAPTHVADDASEGEVTCTDMWRLRDPNPNFRFTSSRSKVTSAVKRKRSEEIADLNLRLTPSFVQNSPPYSCRRDIRRPGTPSMNSEESVTTTACLDSGLVDRYAPGGERKVLNLFI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0250 232 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lal16g0250 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lal16g0250 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
Lal16g0250 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0250 Lal-Chr16 1490570 1491949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0250 1 232 AS2 family AT4G37540 56.175 4.04e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal16g0250 LOB 7.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0250 - - lang:109332579 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0250 16 1490570 1491949 Lal15g1307 15 14926512 14927791 LSH
Lal16g0250 16 1490570 1491949 Lal24g0295 24 2124638 2126193 PCT
Lal15g1307 15 14926512 14927791 Lal16g0250 16 1490570 1491949 PCT
Lal16g1328 16 9536038 9537466 Lal16g0250 16 1490570 1491949 PCT