Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0244 ATGTCGAAGGCGCGTGTTTACACCGACGTCAATGTCCTTCGCTCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGAAAATTGGGAAGGGGGAAATATAGTGAGGTTCTTGAAGGCATAAATGTTAACAACAATGAGCGCTGTGTAATCAAGATCCTCAAGCCTGTCAAGAAAAAGAGGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTATGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCGACATTCAAAAACTCCGAGCTTGATATTTGAGCATGTCAATAGTACAGATTACAAAGTTCTATATCTGACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGCCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCACAATGTTATGATTGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAGTTTTATCATCCTGGAAAGGAATACAATGTTCATGTAGCTTCAAGATACTTTAAGGGCCCTGAACTTCTGGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTAGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTAATGACAACCATGATCAGCTTGTTAAAATAGCAAAGGTACTAGGTACCGATGAACTGAATGCATATCTGAATAAATATCACCTCGAGCTTGATCCTCAACTCAATTCACTTGTTGGAAGGCACAGTCGCAAGCCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAACTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGACTAACAGCAAGAGAAGCAATGGCTCATCCATATTTCTCTCAGGTAAGGGTAGCAGAATGA 981 0.4057 MSKARVYTDVNVLRSKEYWDYESLTVQWGDQDDYEVVRKLGRGKYSEVLEGINVNNNERCVIKILKPVKKKRIKREIKILQNLYGGPNIVKLLDIVRDRHSKTPSLIFEHVNSTDYKVLYLTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVHVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGNDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLNSLVGRHSRKPWSKFINADNQHLVSPEATDFLDKLLRYDHQDRLTAREAMAHPYFSQVRVAE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0244 326 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0244 326 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0244 326 CDD STKc_CK2_alpha 16 319 IPR045216 GO:0004674|GO:0006468
Lal16g0244 326 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0244 326 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Lal16g0244 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lal16g0244 326 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 326 - -
Lal16g0244 326 SUPERFAMILY Protein kinase-like (PK-like) 27 323 IPR011009 -
Lal16g0244 326 Gene3D Transferase(Phosphotransferase) domain 1 107 325 - -
Lal16g0244 326 Gene3D Phosphorylase Kinase; domain 1 20 106 - -
Lal16g0244 326 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 326 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0244 Lal-Chr16 1451094 1455330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0244 40 322 Core Cell Cycle Gene Families AT1G73690 31.667 3.26e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lal16g0244 Pkinase 6.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0244 K03097 - tcc:18611255 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0244 16 1451094 1455330 Lal15g1295 15 14759223 14766338 LSH
Lal16g0244 16 1451094 1455330 Lal23g1302 23 13995192 13999581 LSH
Lal16g0244 16 1451094 1455330 Lal15g1295 15 14759223 14766338 PCT
Lal16g0244 16 1451094 1455330 Lal16g1332 16 9621159 9629181 PCT
Lal15g1295 15 14759223 14766338 Lal16g0244 16 1451094 1455330 PCT
Lal16g1332 16 9621159 9629181 Lal16g0244 16 1451094 1455330 PCT