Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0240 ATGTTGGAGCTGTTTCAAAGGCCATTTGAGACGTGCTTTGGTGGTGGTGGAGGAGGAAGCAACGATAGTCTATTATGGCACGTGGATTTGGAGCCACATGCTTCAGGGGAATATTCAATTGCAGTGGTACAAGCTAATTCGTTATTGGAGGACCAAGGACAAGTTTTTACCTCTCCCTCCGCAACTTTCATTGGAGTATACGATGGTCATGGTGGACCTGAGGCTTCCCGTTTCATTACTAAACATCTCTTTTCCTTCTTTCATAAGTTTATTTCAGAGGAAGGGAAGATTTCTGAGGAAGTGATAATGAAGGCTTTCAATGCAACGGAAAAGGAATTCTTGCATTTAGTGAAGCAAACATGGATTACTCTGCCACACATTGCTGCAGTGGGTTCATGTTGTCTTCTTGGGGTGATTTCAAATAATGATATTTATGTTGCAAATCTTGGGGATTCAAGAGCAGTGCTGGGTCGGAAAGGCGCATTTAGGAGTCAGGTAAATTGTGCTGCTGCTGTAGTGCCAGAGCGTTTGTCTACTGATCATAATGTTGGAGTTGAAGAGATCAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGCACACGTTGTAGTTCACACTCGTGGAGTTTGGCGAATCAAGGGTATTATTCAGGTCTCAAGATCGATTGGTGATGTTTATCTAAAGAAACCAGAGTTTGACAAAAATCCTCTATTCCAACAATTTGTATGTCCAGTACCTTTAAAGAGACCTGTAATTACGACAGAACCGTCAATATTTACGCGGAAATTGACAGCAGAGGATTTGTTTGTCATCTTTGCATCAGATGGACTATGGGATCATTTAACTGATGAAGCAGCTGTTGAAATCGTCTTCAGAAATCCAAGAAAAGGAGTAGCAAAACGATTGGTGAGAGCTGCATTGGAAGAGGCTGCAAAGAAAAAAGAAATGAGATATGTGGATTTAAAGAGAATTGAAAAAGGTACAAGGAGAAAGTTCCATGATGACATTACAGTGATCGTTATATACTTAGATCATTCACAAGGTTCTCTGAATAGTAGGCCAAAACATGAGGGTCATTACATTAGTACTCCTGTAGATATCTTCTCTCTGAATGCAGATGAAACTGACCTATAA 1134 0.4092 MLELFQRPFETCFGGGGGGSNDSLLWHVDLEPHASGEYSIAVVQANSLLEDQGQVFTSPSATFIGVYDGHGGPEASRFITKHLFSFFHKFISEEGKISEEVIMKAFNATEKEFLHLVKQTWITLPHIAAVGSCCLLGVISNNDIYVANLGDSRAVLGRKGAFRSQVNCAAAVVPERLSTDHNVGVEEIRKEVEALHPDDAHVVVHTRGVWRIKGIIQVSRSIGDVYLKKPEFDKNPLFQQFVCPVPLKRPVITTEPSIFTRKLTAEDLFVIFASDGLWDHLTDEAAVEIVFRNPRKGVAKRLVRAALEEAAKKKEMRYVDLKRIEKGTRRKFHDDITVIVIYLDHSQGSLNSRPKHEGHYISTPVDIFSLNADETDL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0240 377 ProSiteProfiles PPM-type phosphatase domain profile. 37 343 IPR001932 -
Lal16g0240 377 CDD PP2Cc 44 343 IPR001932 -
Lal16g0240 377 Gene3D - 28 350 IPR036457 -
Lal16g0240 377 PANTHER ALPHABET, ISOFORM E-RELATED 5 376 - -
Lal16g0240 377 Pfam Protein phosphatase 2C 59 313 IPR001932 -
Lal16g0240 377 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Lal16g0240 377 SMART PP2C_4 27 341 IPR001932 -
Lal16g0240 377 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 5 376 - -
Lal16g0240 377 SUPERFAMILY PP2C-like 44 344 IPR036457 -
Lal16g0240 377 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0240 Lal-Chr16 1437767 1440515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0240 19 349 PP2C-type Phosphatase Gene Family AT3G51370 53.097 3.03e-133 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0240 - K01102 gmx:100802394 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0240 16 1437767 1440515 Lal12g0393 12 2785172 2788303 PCT
Lal16g0240 16 1437767 1440515 Lal13g0385 13 2414474 2418026 PCT
Lal16g0240 16 1437767 1440515 Lal24g0300 24 2152038 2157175 PCT