Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0235 ATGAACACATCCATCACCAGAAAAGATATGGATCGGATCCGTGGCCCATGGAGCCCAGAAGAGGACGCTGCTCTTCAAAATCTCGTAGAGAAGCACGGGCCTAGGAATTGGTCACTCATCAGCAAATCCATTCCAGGTCGATCTGGAAAATCATGCAGGCTCCGTTGGTGCAACCAGCTCTCTCCTCAGGTGGAACATCAGGCTTTCACACCTGAAGAGGATGAAACAATAATCAGAGCCCATGCCCGATTCGGAAACAAATGGGCCACCATAGCCCGACTCCTCTCGGGCCGAACCGATAACGCAATCAAGAACCACTGGAACTCCACTTTGAAGCGCAAGTGCGCTTCCTTCATGATGGACGGCCCTGACGTTAATCCTCAGCCGTTGAAACGTTCCGTTAGTGCTGGCGCTGCTATACCCGTGTCCACGGGACTTTACATGAACCCGCCCACACCTAGTAGCCCATCTGGATCCGATGTGAGCGAGTCCAGTGTACCGGTTGCGTCCTCTTCACACGTGTACCGACCTGTTCCAAGAACCGGCGGTGTTATAATAGAAACGACGTCGTCCTCCAATGATCCTCCAACTTCATTATCTCTCTCCCTTCCCGGTTTGGACTCTTCTTCTGAAGTCTCGAATCGTGTATCTGTGTCTGATTATAGCGCTTGTGCGCCGATACAATTGAATACGGTGTCTTTGTTATCACCGATAATGGCTGAGCCAGTGTCGACTGTAGCTCCGATAGAGGTGCGTCAGAAGGAGGTTCATGATCTGAAGTCGATGGCGGCGTTTAATTTTAATGGAGAGTTGTTGGCGGTGATGCAGGAAATGATAAGAAAGGAAGTGAGGAATTATATGGAGGAACAGAATGGGATGTGTTTTCAGGCAGCTGATGATGGATTTCGGGAGGCGTCGGTGAAGAGTATTGAGAAGCAGGATCGATTCGCAATAATTTCGGTTAATGTACAGAGCGAAAACTCGTTCGCTACCAGAGACATGGATTGA 1008 0.498 MNTSITRKDMDRIRGPWSPEEDAALQNLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHQAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMDGPDVNPQPLKRSVSAGAAIPVSTGLYMNPPTPSSPSGSDVSESSVPVASSSHVYRPVPRTGGVIIETTSSSNDPPTSLSLSLPGLDSSSEVSNRVSVSDYSACAPIQLNTVSLLSPIMAEPVSTVAPIEVRQKEVHDLKSMAAFNFNGELLAVMQEMIRKEVRNYMEEQNGMCFQAADDGFREASVKSIEKQDRFAIISVNVQSENSFATRDMD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0235 335 MobiDBLite consensus disorder prediction 184 207 - -
Lal16g0235 335 PANTHER MYB PROTEIN-RELATED 6 288 - -
Lal16g0235 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Lal16g0235 335 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Lal16g0235 335 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lal16g0235 335 Gene3D - 13 65 - -
Lal16g0235 335 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lal16g0235 335 SMART sant 65 113 IPR001005 -
Lal16g0235 335 SMART sant 13 62 IPR001005 -
Lal16g0235 335 CDD SANT 68 111 IPR001005 -
Lal16g0235 335 Pfam Myb-like DNA-binding domain 17 75 - -
Lal16g0235 335 MobiDBLite consensus disorder prediction 145 207 - -
Lal16g0235 335 MobiDBLite consensus disorder prediction 147 171 - -
Lal16g0235 335 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 6 288 - -
Lal16g0235 335 Gene3D - 67 126 - -
Lal16g0235 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Lal16g0235 335 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0235 Lal-Chr16 1414366 1415464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0235 6 287 MYB Transcription Factor Family AT4G37260 56.164 3.82e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g0235 Myb_DNA-bind_6 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0235 K09422 - gmx:780556 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0235 16 1414366 1415464 Lal23g1314 23 14046517 14047398 LSH
Lal16g0235 16 1414366 1415464 Lal23g0896 23 11205254 11206384 PCT