Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0233 ATGAACAACCGTTGTAGAACAAGACAAAAAAACATGTCTCTCAGAGAAGAAGAACAACACTCTTCTCCGTTTCTCTGTGAAGAACAACAATACACGTTGGAGGAGGAAGATTCTAGACCCAACAGCATCATCGAGGGAGAGAGTGAGAGTGATAACGCTGACTCAACCTTAATAAAGTTACAATCTTTACCTTTTATTTTGTTGGACAATGACGAAGAATTCTTTTCTCTAATCTCAAAACAGAGACTCACCCATTTCTATTCCAATGCTCTTCTTCTTGAGGACGCTCCTCGTCGCTATGATGCTGTGTTGTGGATTTCTAAGGTTTCATTGATCTATGGTTTCACTGCTTTGACCACTGTTCTTGCTGTTAATTACTTTGATAGATTCATCACCACTTTAAGGTTTCAGATGGATAAGCCATGGATGACTCAGCTTACTGCTGTTGCTTGTTTATCTCTTGCTGCCAAAATGGAAGAAACCCATGTCCCACTTCTCTTAGACCTCCAAGTGGGGGAATCAAGATTTGTGTTTGAAGCAAAGAGTATTCAGAGAATGGAACTTCTAGTATTGTCCACTCTTAAATGGAGGATGAATCCTGTCACCTCAATTTCCTTCTTTGAACACATTGTCAGAAGGTTTGGTATGAAGAGTCCCTTGCATTCGGAGTTTCTGTGGAGGTGTGAAAGAGTTCTTCTCTCTGTCATTGCAGATTCAACAGTTATGAGTTTTCTTCCTTCTACATTGGCTGCTGCTACAATGATCCACGCTGTTGAAGAGATTGATCAATTTAATGCAATAGAATACAGAACTCAACTTCTGGCTTTACTCAAAACTACTGAGGAACACGTGAACAAATGCTACAAACTCATACTGAAACTATTATCTTGCTATGAAGGCGTTCACAATCTTGGCCAGAAACGCAAATGCTTACCTGGACCAAGTATCTCATGTGGCAGTGTCACAGATGTGTCTTTCAGTAGTGATAGCTCAAATGATTCATGGACTGTGGCACCATCAGTCTGGGTTGAGCCGATGTTTAAGAAGAGCAAAGTTCAGGACCAGCGCATGTGGTTGCCTTCATTAAATTGTGTTTCTATTGATGTTCTAAATAGTCCTCCTTGA 1125 0.4053 MNNRCRTRQKNMSLREEEQHSSPFLCEEQQYTLEEEDSRPNSIIEGESESDNADSTLIKLQSLPFILLDNDEEFFSLISKQRLTHFYSNALLLEDAPRRYDAVLWISKVSLIYGFTALTTVLAVNYFDRFITTLRFQMDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVGESRFVFEAKSIQRMELLVLSTLKWRMNPVTSISFFEHIVRRFGMKSPLHSEFLWRCERVLLSVIADSTVMSFLPSTLAAATMIHAVEEIDQFNAIEYRTQLLALLKTTEEHVNKCYKLILKLLSCYEGVHNLGQKRKCLPGPSISCGSVTDVSFSSDSSNDSWTVAPSVWVEPMFKKSKVQDQRMWLPSLNCVSIDVLNSPP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0233 374 PANTHER CYCLIN-D3-2 16 341 - -
Lal16g0233 374 Pfam Cyclin, C-terminal domain 201 303 IPR004367 -
Lal16g0233 374 PANTHER CYCLINS 16 341 IPR039361 -
Lal16g0233 374 Gene3D - 200 289 - -
Lal16g0233 374 SMART cyclin_7 104 192 IPR013763 -
Lal16g0233 374 MobiDBLite consensus disorder prediction 1 22 - -
Lal16g0233 374 CDD CYCLIN 99 191 IPR013763 -
Lal16g0233 374 Pfam Cyclin, N-terminal domain 94 199 IPR006671 -
Lal16g0233 374 SMART Cyclin_C_2 201 327 IPR004367 -
Lal16g0233 374 SUPERFAMILY Cyclin-like 71 199 IPR036915 -
Lal16g0233 374 SUPERFAMILY Cyclin-like 183 302 IPR036915 -
Lal16g0233 374 Gene3D - 98 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0233 Lal-Chr16 1397711 1399795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0233 51 363 Core Cell Cycle Gene Families AT5G67260 48.148 8.58e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0233 K14505 - gmx:100785030 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0233 16 1397711 1399795 Lal15g1257 15 14175067 14177312 LSH
Lal16g0233 16 1397711 1399795 Lal23g0189 23 1672243 1674788 LSH
Lal16g0233 16 1397711 1399795 Lal12g0409 12 2906137 2908184 PCT
Lal16g0233 16 1397711 1399795 Lal13g0405 13 2535872 2538092 PCT
Lal16g0233 16 1397711 1399795 Lal24g0325 24 2308314 2310804 PCT
Lal15g1257 15 14175067 14177312 Lal16g0233 16 1397711 1399795 PCT
Lal23g0189 23 1672243 1674788 Lal16g0233 16 1397711 1399795 PCT