Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0228 ATGAACGGTGAAGGTGGTGGTGGTGGTGGCGGTGGAGCAAGAGAGATGGGTACGAGGAAGAGAGGGAAAGAGAGTGGAGAGAGAAGGTACAAAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTCGCTGAGATCAGAGAACCTAACAAGCGTTCAAGGATTTGGCTCGGTTCTTATTCCACACCCGTTGCGGCGGCGCGTGCTTACGACACCGCTGTCTTCTATCTCCGTGGTCCATCAGCTCGCCTCAACTTCCCCGAGCTTTTAACGGGCGATAACGGCGCTGTTATTGCCAACTGTGATATGTCGGCGGCTTTTATTAGAAAGAAAGCAACGGAGGTCGGTGCCAGAGTCGATGCACTCCAAGCCACCCACCACCATCACCACGTAGCGGTGGCGCCGGAGCTCGTTGTGTCTGATGGTGGCGACGACAACCGCTCTGGTCACTTTTCAGAGCTGGTTGACCTGAACAAAATACCCGAACCGGAGAATTCGGACTGCGAATTTGATATGAATTAG 519 0.5356 MNGEGGGGGGGGAREMGTRKRGKESGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLTGDNGAVIANCDMSAAFIRKKATEVGARVDALQATHHHHHVAVAPELVVSDGGDDNRSGHFSELVDLNKIPEPENSDCEFDMN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0228 172 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lal16g0228 172 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Lal16g0228 172 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lal16g0228 172 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lal16g0228 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 166 - -
Lal16g0228 172 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lal16g0228 172 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lal16g0228 172 MobiDBLite consensus disorder prediction 1 28 - -
Lal16g0228 172 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lal16g0228 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 12 166 - -
Lal16g0228 172 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0228 Lal-Chr16 1370204 1370722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0228 16 170 AP2-EREBP Transcription Factor Family AT2G23340 60.234 6.76e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0228 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0228 K09286 - gmx:100527066 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0228 16 1370204 1370722 Lal15g0173 15 1218914 1219408 LSH
Lal16g0228 16 1370204 1370722 Lal23g1321 23 14088659 14089162 LSH