Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0226 ATGTGGGATCTGAATGATTCCCCTGATCAGAGTTATGATAATAAAGACAAAAGCGTCGGATCTGTTTCCAATTCCAGCTCTTCCGCGGTGGTAATCGAAGATGATGATGGATCAGAAGAAGAATTGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTTTGTGACCCACCACCATGATGATGCTGAGTCCATGAATAGTGACAACTTACCCGTAACTCAACAGCTTTTACCGGTGGAGGAGGAGTCTGAGATGGCAGCACCCTCCGTGTCTCACTGTGTAGGAGTGAAATTATGTCAATCAGAAGGAGTTGGTGGTGGAAAATCAGTGGAAATGTCTCAGCCTATGAAGAAGAGTAGAAGAGGACCAAGGTCTCGGAGCTCACAGCATAGGGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCACATATTTGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCGATTAAATTCCGGGGAGTAGATGCAGACATAAACTTCAACGTAGAAGATTATGAACAAGATCCGAAGCAGATGAGCAATCTAACGAAGGAGGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATATCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTCTTCACAAATGTGGAAGATGGGAAGCAAGAATGGGCCAATTTTTAGGCAAAAAGTGCGTTTATCTGGGTCTTTTTGACACTGAGGTTGAGGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAAGCCCTCACTAATTTTGACCCCAGCGTCTATAATCACGAACTTAACCCTGGATCTTCAGGGAACCCCGCATATCACAATTTGGATTTAACTTTAGGAAATTCGAGCTCTAAGCACAGCAATAATAAAGCATTGGGCAATCACACCCAAAATGCTGCAACTAATCACACTCCTAAGCTCGTGAACATACTACCAAAGGTATGTAGTAGAAGCAACATGGATAGGCATGGTCCTACGACTCCTTTCAAGTCTTCTGGGGAGCCTCACAATTTTGCACATCATCTTCACCCACCAAATTTTTATTTACCCAGCAGCAGCAATGGAGGCAGAATTGGAAGTGATCTTTCATTATCAATGACCAATCAACAACATTGGCAAATGAGACCTACACCTTTTTTAGCAACTGCTGCAGCATCATCAGGATTCTCACCTCAGATAAGAGTGATAAGACCCTCCCATGGTTGTTGGGTACAGAAAAATGGCTTCCATAATCTCTTGAGACCCCCTTGA 1320 0.4394 MWDLNDSPDQSYDNKDKSVGSVSNSSSSAVVIEDDDGSEEELKKRSSKIFGFFVTHHHDDAESMNSDNLPVTQQLLPVEEESEMAAPSVSHCVGVKLCQSEGVGGGKSVEMSQPMKKSRRGPRSRSSQHRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVEDYEQDPKQMSNLTKEEFVHVLRRQSTGYPRGSSKYRGVTLHKCGRWEARMGQFLGKKCVYLGLFDTEVEAARAYDKAAIKCNGKEALTNFDPSVYNHELNPGSSGNPAYHNLDLTLGNSSSKHSNNKALGNHTQNAATNHTPKLVNILPKVCSRSNMDRHGPTTPFKSSGEPHNFAHHLHPPNFYLPSSSNGGRIGSDLSLSMTNQQHWQMRPTPFLATAAASSGFSPQIRVIRPSHGCWVQKNGFHNLLRPP 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0226 439 MobiDBLite consensus disorder prediction 1 40 - -
Lal16g0226 439 ProSiteProfiles AP2/ERF domain profile. 220 277 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 MobiDBLite consensus disorder prediction 14 32 - -
Lal16g0226 439 CDD AP2 219 279 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 Pfam AP2 domain 219 268 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 Pfam AP2 domain 128 176 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 Gene3D AP2/ERF domain 127 186 IPR036955 GO:0003700|GO:0006355
Lal16g0226 439 Gene3D AP2/ERF domain 219 278 IPR036955 GO:0003700|GO:0006355
Lal16g0226 439 ProSiteProfiles AP2/ERF domain profile. 128 184 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 MobiDBLite consensus disorder prediction 103 130 - -
Lal16g0226 439 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 PRINTS Ethylene responsive element binding protein signature 259 279 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 SUPERFAMILY DNA-binding domain 219 279 IPR016177 GO:0003677
Lal16g0226 439 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Lal16g0226 439 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 341 437 - -
Lal16g0226 439 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 7 326 - -
Lal16g0226 439 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 341 437 - -
Lal16g0226 439 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 326 - -
Lal16g0226 439 SMART rav1_2 220 283 IPR001471 GO:0003700|GO:0006355
Lal16g0226 439 SMART rav1_2 128 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0226 Lal-Chr16 1353067 1357016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0226 1 438 AP2-EREBP Transcription Factor Family AT4G36920 54.025 1.93e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lal16g0226 AP2 1.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0226 K09284 - gmx:100792442 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0226 16 1353067 1357016 Lal15g1247 15 13984755 13990074 LSH
Lal16g0226 16 1353067 1357016 Lal23g1323 23 14095655 14102235 LSH
Lal16g0226 16 1353067 1357016 Lal15g1247 15 13984755 13990074 PCT
Lal16g0226 16 1353067 1357016 Lal16g1374 16 10191039 10195034 PCT
Lal15g1247 15 13984755 13990074 Lal16g0226 16 1353067 1357016 PCT
Lal16g1374 16 10191039 10195034 Lal16g0226 16 1353067 1357016 PCT