Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0219 ATGTCTCAGCGATCGGTGGCGGCGCCGTTTTTGACAAAGACGTATGAATTGGTGGATGATCCAGTGACAGATGGAGTAATATCTTGGAGTGAAAGTGGGAAGACGTTTGTGGTGTGGAAGCATGCAGAATTTGCAAAAGAGTTACTTCCCAAATATTTCAAACACAACAACTTCTCCAGCTTTGTTCGTCAGCTCAATACATATCAATTCCGAAAAACCGTTCCAGACAAATGGGAATTCGCCAACGAACACTTCAATCGAGGCCAAAAACAGCTCCTATCTCAGATCAAACGTCGCAAGACGAATCTGCCACAATCATCGGCTCAGCCTCAAGTGATCGGAAAATCTGACGCCAACGATAACTCACCGTCAAACTCCGGCGCCGACAACATGGTTTCCACGTCCACATCCTCCCCCAATTCTAAGAACTCGGGATTGATGGAAGAGTCAGATTTATCAAGTGAGAACCAAAAGCTGAAAAAAGATAATGAAACACTAAGTTCTGAGCTGGCGCATGCGAAGAAGCAATGCGATGAGTTGGTGATTTTTCTAAGGGATTGTTTGATGGTGGGTCCCGATCAAATTAATCACGTATTAGGACAAGGAAGTTCTGGATCCACCCATGAAACGGTGCGTTCTAATGCTGATGAAAATGTGGTAGTTGAAAGTGGTGGTGGGGATAGTTTGAAACTATTTGGTGTTTGGTTGAAAAATGACACAGCAAAAGAGAAAAATATGAAGAGAAAGTGCCAAGACCAATTGGGCCTGGATGGGCCTCGCGTCAAGGAATTTAAAACTGTTCTTAGCTTTAGTGGTGCTACTACTATCTTATGA 834 0.4376 MSQRSVAAPFLTKTYELVDDPVTDGVISWSESGKTFVVWKHAEFAKELLPKYFKHNNFSSFVRQLNTYQFRKTVPDKWEFANEHFNRGQKQLLSQIKRRKTNLPQSSAQPQVIGKSDANDNSPSNSGADNMVSTSTSSPNSKNSGLMEESDLSSENQKLKKDNETLSSELAHAKKQCDELVIFLRDCLMVGPDQINHVLGQGSSGSTHETVRSNADENVVVESGGGDSLKLFGVWLKNDTAKEKNMKRKCQDQLGLDGPRVKEFKTVLSFSGATTIL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0219 277 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0219 277 Coils Coil 149 176 - -
Lal16g0219 277 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 267 IPR027725 -
Lal16g0219 277 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0219 277 Gene3D - 2 101 IPR036388 -
Lal16g0219 277 SUPERFAMILY "Winged helix" DNA-binding domain 8 99 IPR036390 -
Lal16g0219 277 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 267 - -
Lal16g0219 277 MobiDBLite consensus disorder prediction 100 152 - -
Lal16g0219 277 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0219 277 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0219 277 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0219 277 MobiDBLite consensus disorder prediction 100 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0219 Lal-Chr16 1313620 1316343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0219 2 267 HSF AT4G36990 50.923 2.74e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal16g0219 HSF_DNA-bind 3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0219 K09419 - gmx:100791543 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0219 16 1313620 1316343 Lal15g0164 15 1143915 1149378 LSH
Lal16g0219 16 1313620 1316343 Lal16g1393 16 10545154 10550380 PCT
Lal16g1393 16 10545154 10550380 Lal16g0219 16 1313620 1316343 PCT