Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0208 ATGTCATCATCGAATTCCCCGTGCGCGGCGTGCAAGTTTCTGCGGCGGAAATGCACGCAAGAATGCGTGTTCGCGCCGTATTTTCCACCGGACAACCCTCAAAGATTCGCGTACGTGCACAAGGTTTTCGGTGCCAGCAACGTGGCCAAGCTTCTTAACGAACTCAGCGCGGCGCAGCGAGATGACGCTGTTAAGTCCCTCGCTTACGAAGCGGAGGCGCGTCTCCGAGACCCGGTTTATGGTTGCGTGGGTCTTATCTCCGTTCTACAACACAGGCTCAGGCAGATCCAAATGGAGCTTAGTAATGCAAAGAAGGAACTCGCTACTTATATTGGACCCCATGCTCTTCAGGGCATGCCCATCACCGCCACTCTTCAACACCATCACCTCGCCGCTGCCGCCAACCCTTTTACCTCTTCCGTCTCACCCGCTGCTCACGGTGGTCCGTTATTGCTTCGTGAATCTCATCCTCCACAACATCAGATATTGGCGGCTCAGCAATTAGGAGCAAGAGAGCATCAAGAGATGTTTAGGGGTTTTGAGCATCAACAACAGCAGCAACAAGAGTTTCTGAGGTTCAATGGTGGTGGATTCGATTTGGGTTCAGTTTCTGGTAGTGGGTTCAGCCAGCAGGTTTCGCCAGATGCTCCTGTTTCTGATGATCACTTATCTCCTTCATTGGCTTTGGGATCCTTTGAGAACCCTTTTCATCATATGCAGCAACCACAGCAAGTAGAACATCATCTTCCTCTTGAGGCACAACTACTTCTCCCACCCCAGCAGGAAAAGCAGGCGCATCAGCAACAAACCCAGCAGTCACAATTGCATCACCAGCAACAGTTGGAAAGGGAGGAGTGTATGAGTGTGGGCCCATCTGGTTGA 882 0.5181 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQMELSNAKKELATYIGPHALQGMPITATLQHHHLAAAANPFTSSVSPAAHGGPLLLRESHPPQHQILAAQQLGAREHQEMFRGFEHQQQQQQEFLRFNGGGFDLGSVSGSGFSQQVSPDAPVSDDHLSPSLALGSFENPFHHMQQPQQVEHHLPLEAQLLLPPQQEKQAHQQQTQQSQLHHQQQLEREECMSVGPSG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0208 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 269 - -
Lal16g0208 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 269 - -
Lal16g0208 293 Coils Coil 86 106 - -
Lal16g0208 293 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lal16g0208 293 MobiDBLite consensus disorder prediction 204 225 - -
Lal16g0208 293 MobiDBLite consensus disorder prediction 257 293 - -
Lal16g0208 293 MobiDBLite consensus disorder prediction 260 277 - -
Lal16g0208 293 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0208 Lal-Chr16 1258069 1263122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0208 1 219 AS2 family AT5G66870 53.755 1.19e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal16g0208 LOB 1.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0208 - - lang:109348649 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0208 16 1258069 1263122 Lal15g0153 15 1074025 1076606 LSH
Lal16g0208 16 1258069 1263122 Lal23g1350 23 14296289 14300457 LSH
Lal16g1407 16 10828205 10828888 Lal16g0208 16 1258069 1263122 PCT