Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0193 ATGGAAGTACTTCCTTGTTCCGGTGTACAATATGCTAGAGAATCTGAGTGCACTCAGCATAGTTCAGAAACAGGTTTTGTATACCAGGGAGAACCTAATTGGCAGATAAATGGTGAACAAGTTAAATTAGCAGCTAATCTAATGAAAGAACCATCCAATAAGATGGAAGGGCCTCAGATAGAAAGGCAAGGTGAAGGGAAAAAGACTTTTTATGATTTGTCGGATTGCCAATACATTGGAACTTCATGTTGTGACTGTCATGTGAAAGACCAAAGGAAATCCTGTGGTTGCCATAGTTTTAAAGAAGATGTGATAAGTGGACATTGCTTAACTTCCGAGACTTCTCTCGCTGTTGTGGATACGATTGAAAGTGAATCACCAAACAAAAGTAAGGAAGGAGATTTGTCATTGTCTAAGCCTGCGTGGCTAGAGAGAGATGGATCTGTTGCATTGTGGGTAAAGCGGAGAGGGAAGTGGCAGGCTGGCATCAGATGTGCAAGGGCTGACTGGCCTTTATCAACTTTGAGAGCAAAGCCAACTCATGACCGGAAGCAATATTTTGTCATATTTTTTCCACACACTAGAATGTATTCTTGGGCTGATATACTGCTTGTTAGATCAATCAATGAGTTTCCCCATCCAATTGCATATAAGACTCATCATGTAGGATTGAAAATGGTAAAAGACTTGACAGTTGGACGGCGGTTTATAATGCAAAAGCTAGCTGTTGGCATGCTTAACATCATTGATCAGCTTCATTTTGATGCTTTGACAGAAACTGCCCGTGATGTAAAGGTCTGGAAGGAATTTGCCATGGAGGCTTCTCGTTGTAATGGTTATTCTGATGTTGGAAGAATGCTTCTAAAGCTGCATAATAGCATATTGCAGCACTACATAAATGCTGACTGGTTACAGCAATCTTGTCACTCTTGGGTTGAACGATGTCAGAATGCAAATAGTGCTGATTCTGTAGAGCTGCTGGAGGAGGAATTGGTTGAGTCTATCATGTGGAATGATGTCAAAACTCTAGGGGATGAACCAGTGCAACCAACATTAGGTTCTGAATGGAAAACCTGGAAGCATGACGTAGTCAAATGGTTTTCGACATCACCTTCCTTATCAAGCAACAAATACACACAGCATCAGACTTCTGATGGTTCATACCAAGCAAACTTTCAGGTTTCTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAACCAAGGGGTTAGATCACTCTATTACTCTTGAGACTGACCCTGGATTCTTTAAGAATCAGGAAACATTGAGCACAGTGGTAGCTGAGAGTTGTGAACAGGATGATGTCCGGGAGGTATCCATGACAACTGATTCATCGAATAAGTTGGCGAATAAATGGAGTGAAATTGTAGTTGAGGCTGCCAGTTCTGATTTTTTGCATACCAGAGGAAAGGAATCAACCCCTATGAATGAATTAGCTATTTCAAAATCTCTTGAACCCGATAGCAAGAATAGACAATGTATAGCTTATATTGAAGCTAAGGGAAGACAGTGTGTGAGATGGGCAAATGAAGGTGATGTATACTGTTGTGTACATTTGTCCTCCCGTTTTTTGTGCAGCTCAGCAAAAGATGAAAACCATTTTCCAGTTGATACTCCTTTATGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGGGCCCTACCTGGCTTTTCATTCTGTAAGAAACACCGGTCCTATGCTGAAACAGACCAGACCTCGAATTTACCTTACAACGCACTGAAGAGGAAACACGGAAAAAATTATACTGGTTCAGAGGACATGTTCTGCAAAGACATGGTATTGGTAGATGTTGGAAGGGCACTGCAAGTAGACTCAGTGACAGCCATTGGTGATGATTCCTTGCACGGAAAAAGCAACTTGAACAAGAAGCCAATACCTTATGAAAATGATCGTAGTGCAGTGGACACATTGCAGTGTATAGGTTCCAGTCTTTATGATAATGAGAATCCCTGTAAGGAATTTCCTAAGCGTTATTGCTTGTACTGCGAAAGTCACCTTCCAAGCTGGCTCAAACGTGCAAGAAATGGTAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGGGGGACTGCAGTTCATCGGAGCAAAAGGTACATCTGCATAAAGCATGTGAGCTTTTCTACAGGCTATTCAAAAGCATTTTATCAGTAAGAAACCCAGTTCCTGAGGATGTGCAATTCCAGTGGGCTTTGTCTGAAGCCTCTAAAGATCCTGGTGTAGAAGAATTTTTTGCAAAGGTGGTTAATAGTGAGAAAGCGAGAATCAATTTGACTTGGGGATTCAATTATGAGATGGATGTAATCTCTGTCATTAAAGAACCACCTCTCTTGCCGCCCACTATTAACGATAGCTTTCATAATGAAAATGCCATTAAGTGTAAGGTATGCTCTGCAGAATTTCCAGATGACCAAGCACTTGGTAATCATTGGATGGACAGTCATAAAAATGAAGCACAGTGGCTGTTTAGAGGTTATTCTTGTGCCATTTGTCTCGATTCTTTTACTAACAAGAAGTTGTTAGAAACTCATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAGTGCATGCTTCTCCAGTGCATTCCATGTTGTAGTCATTTTGGAAATACTGAGCAATTATGGCAGCACGTTTTATCAATTCATCCTGATGATTTTAAGCCCTCAAAAGTTCTTGACATGAAAATTGTGTCTATTAGCAAAGATTCCCCAGCAAAACATGACCAAGGAAATTCAGCCTCTTTGGAGAATCCTTCTGAGAATCCAGGTGCTGTGCGGAAGTTTGTTTGCAGGTTCTGTGGCTTGAAATTCAATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCTCATATGGGGCCCAATCTTGTCAGCAGCCGCCCCACAAAGCGTGGAGTTCGCTTTTATGCGTACAGATTAAAATCTGGCAGACTTAGCCGTCCTAGACTTAAAAAAGGTGTGGCAGCAATGTCATACAAGATCAGAAATAGGGCTAGTGCTAATTTAAAGAGATGCATTCAAGCAACAAAGTCAATCGACATGGGGCGAACCGTCATACAACCTGGTGTAACTGAAATAACTGATATTACTAGATTGGCAAAACATCAATGCTCAGCTGTTGCGAAGATTTTGTTTTCTGAGATTCAGAAGAGTAAAACTCGCCCGAACAATCTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTCTAGCTTCACTGGAAGAGGAATATGGAATTCTGCCTGAAAAGCTGTATTTGAAGGCAGCGAAGCTTTGCAGTGATAATAATATTGCAGTAAAATGGCACCAAGAGGGGTTTATCTGTCCTAGAGGTTGTAAGGTATTGATTGACCAAGCCTTGCACTCTCCTTTATCATCTCTTCCCAATGGTTTTGTGAAGCCAAATTCTGAAAATTTGTCAGATTCTGCAAGCGAAGAGTGGGAGGTCGATGAATTTCACTGCATCATGAATCTACATAGTTTTAAATCCGAGTCACTGCAAAAGGCTGTAATCTTGTGTGATGACATAAGCTTTGGGAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGAACTTATGTATTCTCTTAATGTGTCCAACGAACAAGATATAAACTCGTCAATGCCTTGGAAGAGCTTTACGTATGTTACAAAGCCAAATCTTGATCAATCCCTTAGTCTTGATTCAAAGACTCCACAATTGGGGTGTGCCTGCCCATATTCTACTTGCTGCCCTGAAACATGTGATCATGTATACCTTTTTGGTAATGACTATGATGATGCAAAAGACATATTTGGGAAACCGATGCGTGGCAGGTTCCCGTATGATGAGAATGGTCGAGTGATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACAAAATGTGCAGATGCAATAAATCCTGTCCAAACAGAATATTGCAGAATGGAGGATGGGCTGTAAGGGCTGGCGAAGCTATTCTACGTGGCACATTTGTGTGCGAGTACATCGGAGAGGTTTTAGATGTGCAGGAGGCACACAATAGGCGCAAGAGATATGGCACAGAGAATTGCAGCTATTTCTATGATATCAATTCTCATGTTAATGATATGAGCAGATTGATTGTAGAACAGGCCCAATATGTAATTGATGCTACTAAATACGGAAATGTCTCACGGTTCATCAATCATAGCTGCTCGCCCAATCTAGTTAATCACCAAGTTCTTGTGGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTATGCAAGTCGAGATGTTGCTTTGGGTGAAGAACTAACATTTGACTATCACTATGAGCCTATACCTGGAGAAGGATTTCCTTGTCTTTGTGGATCTTTGAAGTGTAAGGGACGCCTTTACTAG 4461 0.412 MEVLPCSGVQYARESECTQHSSETGFVYQGEPNWQINGEQVKLAANLMKEPSNKMEGPQIERQGEGKKTFYDLSDCQYIGTSCCDCHVKDQRKSCGCHSFKEDVISGHCLTSETSLAVVDTIESESPNKSKEGDLSLSKPAWLERDGSVALWVKRRGKWQAGIRCARADWPLSTLRAKPTHDRKQYFVIFFPHTRMYSWADILLVRSINEFPHPIAYKTHHVGLKMVKDLTVGRRFIMQKLAVGMLNIIDQLHFDALTETARDVKVWKEFAMEASRCNGYSDVGRMLLKLHNSILQHYINADWLQQSCHSWVERCQNANSADSVELLEEELVESIMWNDVKTLGDEPVQPTLGSEWKTWKHDVVKWFSTSPSLSSNKYTQHQTSDGSYQANFQVSRKRPKLEVRRADTHASQVETKGLDHSITLETDPGFFKNQETLSTVVAESCEQDDVREVSMTTDSSNKLANKWSEIVVEAASSDFLHTRGKESTPMNELAISKSLEPDSKNRQCIAYIEAKGRQCVRWANEGDVYCCVHLSSRFLCSSAKDENHFPVDTPLCEGTTVLGTRCKHRALPGFSFCKKHRSYAETDQTSNLPYNALKRKHGKNYTGSEDMFCKDMVLVDVGRALQVDSVTAIGDDSLHGKSNLNKKPIPYENDRSAVDTLQCIGSSLYDNENPCKEFPKRYCLYCESHLPSWLKRARNGKSRIVSKEVFTELLGDCSSSEQKVHLHKACELFYRLFKSILSVRNPVPEDVQFQWALSEASKDPGVEEFFAKVVNSEKARINLTWGFNYEMDVISVIKEPPLLPPTINDSFHNENAIKCKVCSAEFPDDQALGNHWMDSHKNEAQWLFRGYSCAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCCSHFGNTEQLWQHVLSIHPDDFKPSKVLDMKIVSISKDSPAKHDQGNSASLENPSENPGAVRKFVCRFCGLKFNLLPDLGRHHQAAHMGPNLVSSRPTKRGVRFYAYRLKSGRLSRPRLKKGVAAMSYKIRNRASANLKRCIQATKSIDMGRTVIQPGVTEITDITRLAKHQCSAVAKILFSEIQKSKTRPNNLDILSIARSACCKVSLLASLEEEYGILPEKLYLKAAKLCSDNNIAVKWHQEGFICPRGCKVLIDQALHSPLSSLPNGFVKPNSENLSDSASEEWEVDEFHCIMNLHSFKSESLQKAVILCDDISFGKESVPVICVVDQELMYSLNVSNEQDINSSMPWKSFTYVTKPNLDQSLSLDSKTPQLGCACPYSTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRVILEEGYLVYECNKMCRCNKSCPNRILQNGGWAVRAGEAILRGTFVCEYIGEVLDVQEAHNRRKRYGTENCSYFYDINSHVNDMSRLIVEQAQYVIDATKYGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGLYASRDVALGEELTFDYHYEPIPGEGFPCLCGSLKCKGRLY 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0193 1486 ProSitePatterns Zinc finger C2H2 type domain signature. 956 977 IPR013087 -
Lal16g0193 1486 Pfam Zinc finger C2H2-type, 3 repeats 853 978 IPR040689 -
Lal16g0193 1486 Gene3D Classic Zinc Finger 812 883 - -
Lal16g0193 1486 ProSitePatterns Zinc finger C2H2 type domain signature. 819 840 IPR013087 -
Lal16g0193 1486 ProSiteProfiles Zinc finger C2H2 type domain profile. 851 874 IPR013087 -
Lal16g0193 1486 ProSiteProfiles SET domain profile. 1322 1463 IPR001214 GO:0005515
Lal16g0193 1486 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1486 - -
Lal16g0193 1486 ProSiteProfiles Zinc finger C2H2 type domain profile. 954 982 IPR013087 -
Lal16g0193 1486 ProSiteProfiles Post-SET domain profile. 1470 1486 IPR003616 -
Lal16g0193 1486 ProSitePatterns Zinc finger C2H2 type domain signature. 887 908 IPR013087 -
Lal16g0193 1486 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1486 - -
Lal16g0193 1486 ProSiteProfiles Pre-SET domain profile. 1265 1341 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal16g0193 1486 SMART preset_2 1203 1328 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal16g0193 1486 SMART c2h2final6 851 874 IPR013087 -
Lal16g0193 1486 SMART c2h2final6 885 908 IPR013087 -
Lal16g0193 1486 SMART c2h2final6 954 977 IPR013087 -
Lal16g0193 1486 SMART c2h2final6 817 840 IPR013087 -
Lal16g0193 1486 Pfam Pre-SET motif 1207 1336 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal16g0193 1486 SUPERFAMILY SET domain 1195 1476 IPR046341 -
Lal16g0193 1486 SMART set_7 1330 1469 IPR001214 GO:0005515
Lal16g0193 1486 Gene3D SET domain 1195 1486 IPR046341 -
Lal16g0193 1486 Pfam SET domain 1342 1462 IPR001214 GO:0005515
Lal16g0193 1486 ProSiteProfiles Zinc finger C2H2 type domain profile. 817 845 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0193 Lal-Chr16 1181051 1191639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0193 129 1485 C2H2 Transcription Factor Family AT2G23740 49.496 0.0 1321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0193 Pre-SET 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0193 - - gmx:100786757 2328.13