Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0190 ATGGCGGGTAGTGGTTTTGGTAAATCAACGACGTCGTTTTCTCCACCAAGCCCATCTTGCTCGGGTAATAATAACAATTCTAACAACGATGCTGGTGATTTTGAATGCAACATATGTTTCGATTTAGCCCAAGATCCAGTCATCACTCTATGTGGTCACTTATTTTGTTGGCCATGCCTATATCGGTGGCTCCATCATCATTCACATTCTCAAGAGTGTCCAGTTTGCAAGGCCCTCGTTCAAGAAGAGAAGTTGGTTCCTCTTTATGGGAGGGGGAAGAATCAATCTGATCCCAGAACTAAATCTTATCCTGGGATGGAGATTCCTCATCGTCCTTCAGGGCAGAGGCCTCAAACCGCACCGCCCCCTCCTCCTGATGCGGCTGCTGCTAACCCGTTTGGGAATGTAGGTTTTGGATTGATGGGAGGGTTTATTCCCATGGCTACTGCCAGATTTGGGAATTTTACCCTTTCCACTGCTTTTGGTGGTTTTATACCCTCTCTGTTCAACATTCAGTTCCATGGATTTCAAGGTGCCAATGTGTATGGGTCGACTTCAGGTTATCCCTTTGGGTCTAACACGTTTCATGGAGGGGAGAATATGCGTGGTTTTTCGCAGGGAACTGGTCAGGTGCAGGGGCAGGAGGACAATGTTTTGAAGAATCTGCTTTTGTTGATTGGTTTCCTTGTCCTTCTTACTGTCATTTTTCTCTGTTAA 717 0.4603 MAGSGFGKSTTSFSPPSPSCSGNNNNSNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKNQSDPRTKSYPGMEIPHRPSGQRPQTAPPPPPDAAAANPFGNVGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLFNIQFHGFQGANVYGSTSGYPFGSNTFHGGENMRGFSQGTGQVQGQEDNVLKNLLLLIGFLVLLTVIFLC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0190 238 MobiDBLite consensus disorder prediction 1 24 - -
Lal16g0190 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 98 IPR013083 -
Lal16g0190 238 SUPERFAMILY RING/U-box 32 89 - -
Lal16g0190 238 MobiDBLite consensus disorder prediction 89 128 - -
Lal16g0190 238 CDD RING-HC_AtRMA_like 34 78 - -
Lal16g0190 238 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Lal16g0190 238 SMART ring_2 36 76 IPR001841 -
Lal16g0190 238 PANTHER RING ZINC FINGER PROTEIN-RELATED 4 236 - -
Lal16g0190 238 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Lal16g0190 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal16g0190 238 Pfam Zinc finger, C3HC4 type (RING finger) 35 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0190 Lal-Chr16 1140415 1141131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0190 24 236 C3H Transcription Factor Family AT2G23780 63.426 2.19e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0190 K10666 - gmx:100814783 374.785