Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0184 ATGAATCATCAACTTATGGAGGACCATATCATGCTCATGTCTCAGCTATATTCTGTCAGTCCATACACTCAAATAGTAGCTCAACAAGGGGAGAACAAGAAGCCAAGACGGAGGCGTAATAAAAAGTGCAAAGGAGTAGAAAGAGGAGCTTTGGAAGCACAAAAGAAGAGGAAACTGAGTTATGAGCAAGTTAATATGCTTGAGCAAAGTTTTGGTAATGAACATAAGCTTGAGTCTGAAAGGAAGGAGAAGCTCGCAGTGGAGCTTGGTTTAGATCCTCGTCAAGTGGCTGTGTGGTTCCAAAACAGAAGAGCTCGTTGGAAGAACAAGAAATTGGAGGAAGAGTACTCCAACCTTAAGAAATCACATGAAGCCACCACCCTCGAGAAATGCCATCTTCAAACTGAGGTGTTGAAGCTCAAGGAAAAACTATTGGAGGCTGAGAAAGAAATTCAAGTACTAAAGCATAGTGATAGAGTCTCTAGCAGTAGCCCCAGTTCATCACACCAGTCTCAGTCAATGGAGGCGGTAGTGGACCCACCATTTCTTGGAGAGTTTCAACTTGATGGATATGATGATGTGCTTTACGTGCCCGAAACACATTACATCAATGGCATGGAATGGATTAACTTGTACATTTGA 642 0.4252 MNHQLMEDHIMLMSQLYSVSPYTQIVAQQGENKKPRRRRNKKCKGVERGALEAQKKRKLSYEQVNMLEQSFGNEHKLESERKEKLAVELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATTLEKCHLQTEVLKLKEKLLEAEKEIQVLKHSDRVSSSSPSSSHQSQSMEAVVDPPFLGEFQLDGYDDVLYVPETHYINGMEWINLYI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0184 213 SMART HOX_1 53 114 IPR001356 GO:0003677
Lal16g0184 213 MobiDBLite consensus disorder prediction 27 47 - -
Lal16g0184 213 Gene3D - 47 118 - -
Lal16g0184 213 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Lal16g0184 213 CDD homeodomain 54 111 IPR001356 GO:0003677
Lal16g0184 213 Coils Coil 102 129 - -
Lal16g0184 213 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Lal16g0184 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 6 212 - -
Lal16g0184 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 212 IPR045224 GO:0003700
Lal16g0184 213 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Lal16g0184 213 SUPERFAMILY Homeodomain-like 55 119 IPR009057 -
Lal16g0184 213 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Lal16g0184 213 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Lal16g0184 213 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0184 Lal-Chr16 1101153 1102774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0184 1 213 Homeobox Transcription Factor Family AT4G36740 52.941 5.87e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal16g0184 Homeodomain 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0184 K09338 - gmx:100809616 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0184 16 1101153 1102774 Lal15g0134 15 937842 940377 LSH
Lal16g0184 16 1101153 1102774 Lal23g1388 23 14522057 14524053 LSH