Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0181 ATGCCGCTTGATTTAGATAATGTTTCCACAGTTTCAGGGGAAGCTAGTGTTTCTTCCTCTGGTAATCAGACAGTACCTTCAAAAACTAAGAAAAAACGAAATCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCAAAGACCCTTATGGCCACAAACAGATTCGTGTGTGAAATTTGCAACAAAGGATTTCAAAGGGATCAGAATCTTCAGCTTCACAGAAGGGGTCATAATCTGCCATGGAAGCTTAGGCAGAGGTCAAGCAAGGAAGTGCGGAAAAGGGTCTATGTTTGTCCAGAACCAACTTGCGTTCACCATGATCCTTCAAGAGCTCTGGGGGATCTCACTGGAATAAAGAAACACTTTTGTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACTAGAGAGTATAAGTGCGATTGTGGGACTGTGTTTTCAAGGAGAGATAGCTTCATCACACATAGGGCTTTCTGTGATGCCTTAGCAGAGGAGAACGCAAGATCTCAGCCTCAGAGTCAAACTACACAGACTCAGAGTGCCATAAAAGCTAATTCTGATTCAGATTCCAAAGCTGTAACCGGAGATGAGTCATCACCTATGGAGGTGCCCCCACTTCCTCCACCATCACCTCCAGCCTCTCCAGCTATTCCTCAGTCAAACAGTGCCGCAATATCTGATTTGCAGATGCAAAATCCAGAGTTGCCAGAAAATACTCCACAAATCATAGAGGAACTACAGGCCAACAATGCTCTAAATGGGAGCTGTAGCACCAGCACCAACACAACAAGCAACGGAGTTAGTGTATTTGCAAGCTTGTTTGCTTCATCAACCACATCTGAAAACCTGCAATCTCAAACACCTGCATTTACTGACCTAATCAGGGCCATGGGACGCCCAGATCATCCGGTGGACATCCCAGGTCCGTCATTTTCTGATCCCATCTCTCTATGCCTTGGCTCGTCAATGTTTGCAACAGGAGGGCAGGAGCACCGACAGTATGCCCCGCCACCACAGCCAGCTATGTCTGCCACTGCGTTGCTGCAGAAAGCTGCTCAGATGGGTGCAGCTGCAACAAATGCCTCTCTACTTCGTGGATTAGGCATAGTTTCATCTTCTGCTTCAACTGCACCAACTCAGCAAGACAGTTTGCAATGGGGTCAGCGACAAGTTGAACAGGACAGTGCCTCTATTTCCCCAGGACTTGGACTTGGGCTTCCTTGTGACAGTGGCTCTGGACTGAAGGAATTAATGTTAGGGGCTCCTTCCTTGTTTGGGCCAAATCAGACCACTCTAGATTTTCTTGGATTGGGGATGGTTGCTGGTGGTACTCCTGGTGGAGGCTTATCGGCGCTGATCACATCAATTGGTGGCAGTCTGGATGTTACTGCAACGGCGGCATCCTTTGGTAATGGAGAGTTCTCAGGCAAGGATATTGGGAGGAACTCATAA 1524 0.4705 MPLDLDNVSTVSGEASVSSSGNQTVPSKTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEENARSQPQSQTTQTQSAIKANSDSDSKAVTGDESSPMEVPPLPPPSPPASPAIPQSNSAAISDLQMQNPELPENTPQIIEELQANNALNGSCSTSTNTTSNGVSVFASLFASSTTSENLQSQTPAFTDLIRAMGRPDHPVDIPGPSFSDPISLCLGSSMFATGGQEHRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTAPTQQDSLQWGQRQVEQDSASISPGLGLGLPCDSGSGLKELMLGAPSLFGPNQTTLDFLGLGMVAGGTPGGGLSALITSIGGSLDVTATAASFGNGEFSGKDIGRNS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0181 507 MobiDBLite consensus disorder prediction 190 219 - -
Lal16g0181 507 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Lal16g0181 507 MobiDBLite consensus disorder prediction 189 244 - -
Lal16g0181 507 Gene3D Classic Zinc Finger 113 193 - -
Lal16g0181 507 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lal16g0181 507 Gene3D Classic Zinc Finger 39 105 - -
Lal16g0181 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Lal16g0181 507 MobiDBLite consensus disorder prediction 225 240 - -
Lal16g0181 507 MobiDBLite consensus disorder prediction 1 41 - -
Lal16g0181 507 SMART c2h2final6 135 155 IPR013087 -
Lal16g0181 507 SMART c2h2final6 100 130 IPR013087 -
Lal16g0181 507 SMART c2h2final6 59 81 IPR013087 -
Lal16g0181 507 MobiDBLite consensus disorder prediction 9 30 - -
Lal16g0181 507 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Lal16g0181 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 507 - -
Lal16g0181 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0181 Lal-Chr16 1086490 1090101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0181 1 507 IDZ Gene Family AT5G66730 60.038 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0181 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0181 K25869 - gmx:100806404 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0181 16 1086490 1090101 Lal23g0224 23 2086580 2089787 LSH
Lal16g0181 16 1086490 1090101 Lal16g1850 16 17655865 17658862 PCT
Lal16g0181 16 1086490 1090101 Lal23g0224 23 2086580 2089787 PCT
Lal16g1850 16 17655865 17658862 Lal16g0181 16 1086490 1090101 PCT
Lal23g0224 23 2086580 2089787 Lal16g0181 16 1086490 1090101 PCT