Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0177 ATGTCTTCTCCTCATAACTCATCACCTGATGATGCTACACCTGACAACAGTACCCCGGATGATGCTGATAACTCATCATCATCATCATTGGAACCACCACCATCAACGCCATCAGAATCATCATCATCACCACCTCCACCACCACCAGAAAATTCATCTCCCCCTCCAACACCACCCTCTTCTGGTAACTCTCCTCCACCACCATCATCATCAACAAACAATCCAACCCCACCATCATCCAATAATGAGTCTCCACCTCCTCCACCATCATCAGGCCATTCTCCACCCTCGCCTTCTAGTGGATCACCATCACCACCGCAACGCAAATCATTGCCAAGTAATAATAATAATAGCACACCATCTCCTCCAGATTCTGATGGCGGTGGTGGTGACAATAACAACAAGGCAATTGTTGGAGCAGTGCTTGGTGTAGGGGTCGTTCTTCTGATCATGGTCATCGTTTGTGTTATTTGCTCCAGGAGGAAGAAGAAAAGAAAGCCAATGTACTACTATGGAGAACCAGATGGAAAAGGGAATCACTATTACAATAATAGTGGTCAGCACCCAGGTGGTTATTATGGAGGTCCACCCCATCTGGACCACGTTGTTGGGGTTCAAAGTGGAATGGCTCCTCCGAACAGTGGTTGGGGTGCACCACCTTCACTAATGATGAACAGTGCTGAAATGAGCGGCAATTTCTCAATGGGACCACCCCCTCTGCCTCCTCCCTCACCAAACCTTGCATTAGGCCTCAAGGGTACCTTCTCTTATGAAGAATTAGCAGCTGCTACAAGCGGATTTCATGATCAGAATTTAATAGGACAAGGCGGGTTTGGTTATGTCCACAAAGGGGTGTTGCCTAATGGAAAGGAAATTGCAGTTAAGAGCTTGAAAGCAGGTAGTGGGCAAGGAGAGCGCGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATACTGTATTGCTGGTGGTCAGAGAATGTTGGTCTATGACTTTATTCCCAATAATACTTTAGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAGGATCGCAATAGGATCAGCCAAAGGGCTTGCATATCTTCATGAAGACTGTCATCCTCGTATCATCCATCGTGATATCAAAGCTGCGAATGTCCTCATTGATGACAGCTTCGAAGCGAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCACGTATCAACTCGTGTCATGGGAACTTTCGGGTACCTTGCCCCTGAATATGCAGCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGTGTCATGCTATTGGAACTCATATCTGGGAAGCGACCTGTGGACCTCACAAACACCATGGAAGACAGCTTAGTGGACTGGGCTCGACCACTGCTAACTCGTGGACTGGAGGAGGATCCTGGGAACTTCAGGGAGTTGGTTGATCCATTTTTGGAGGGAAACTACAATCCTCCTGAAATGGCAAGAATGGCTGCTTGTGCTGCTGGCAGCATTCGCCACTCTGCCAGGAAGCGCCTAAAAATGAGTCAGATTGTGAGAGCATTGGAGGGAGATGTCTCACTAGACGACTTGAGGGAGGGGATGATGAAAACAGGGGTCTCCAATATTCACACCTCTTCATCTAGCTCGGATATTTCGTATGATACAATGCAATACAATCATGATATGCAACAGTTCAAAAAGGCGGTGTTTTCAAGCGAAGTCGGGACCAGCAGTGGCTCTAGTGGCGAAATTAGTCGTTTTCGAGAGACCCCAAGGAGGCTGAATTAA 1848 0.4675 MSSPHNSSPDDATPDNSTPDDADNSSSSSLEPPPSTPSESSSSPPPPPPENSSPPPTPPSSGNSPPPPSSSTNNPTPPSSNNESPPPPPSSGHSPPSPSSGSPSPPQRKSLPSNNNNSTPSPPDSDGGGGDNNNKAIVGAVLGVGVVLLIMVIVCVICSRRKKKRKPMYYYGEPDGKGNHYYNNSGQHPGGYYGGPPHLDHVVGVQSGMAPPNSGWGAPPSLMMNSAEMSGNFSMGPPPLPPPSPNLALGLKGTFSYEELAAATSGFHDQNLIGQGGFGYVHKGVLPNGKEIAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYDFIPNNTLEHHLHGKGVPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVMLLELISGKRPVDLTNTMEDSLVDWARPLLTRGLEEDPGNFRELVDPFLEGNYNPPEMARMAACAAGSIRHSARKRLKMSQIVRALEGDVSLDDLREGMMKTGVSNIHTSSSSSDISYDTMQYNHDMQQFKKAVFSSEVGTSSGSSGEISRFRETPRRLN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0177 615 MobiDBLite consensus disorder prediction 37 105 - -
Lal16g0177 615 MobiDBLite consensus disorder prediction 106 128 - -
Lal16g0177 615 Pfam Protein tyrosine and serine/threonine kinase 270 469 IPR001245 GO:0004672|GO:0006468
Lal16g0177 615 PRINTS Proline rich extensin signature 35 47 - -
Lal16g0177 615 PRINTS Proline rich extensin signature 47 68 - -
Lal16g0177 615 PRINTS Proline rich extensin signature 71 87 - -
Lal16g0177 615 PRINTS Proline rich extensin signature 88 105 - -
Lal16g0177 615 SUPERFAMILY Protein kinase-like (PK-like) 241 541 IPR011009 -
Lal16g0177 615 PANTHER RECEPTOR-LIKE KINASE 36 593 - -
Lal16g0177 615 SMART serkin_6 267 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0177 615 Gene3D Phosphorylase Kinase; domain 1 247 342 - -
Lal16g0177 615 Gene3D Transferase(Phosphotransferase) domain 1 343 555 - -
Lal16g0177 615 MobiDBLite consensus disorder prediction 1 36 - -
Lal16g0177 615 MobiDBLite consensus disorder prediction 593 615 - -
Lal16g0177 615 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524
Lal16g0177 615 ProSiteProfiles Protein kinase domain profile. 267 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0177 615 MobiDBLite consensus disorder prediction 1 132 - -
Lal16g0177 615 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 36 593 - -
Lal16g0177 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0177 Lal-Chr16 1062671 1067736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0177 80 599 Trihelix Transcription Factor Family AT1G70460 47.505 2.36e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal16g0177 PK_Tyr_Ser-Thr 8.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0177 - - lang:109332805 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0177 16 1062671 1067736 Lal15g0052 15 375951 377372 LSH
Lal16g0177 16 1062671 1067736 Lal23g0226 23 2108232 2115619 LSH
Lal16g0177 16 1062671 1067736 Lal23g0226 23 2108232 2115619 PCT
Lal23g0226 23 2108232 2115619 Lal16g0177 16 1062671 1067736 PCT