Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0176 ATGATAAATACACACAACCCATTCTTTCCCTTTTCTGGTTCCGATTCCGTCATAACCTCTCTTTCTGTCTCAGCTCCAACAACCACCATGGGAGACTTCAACAACGATCCACTCCTGCGCAACCAAAACGCCGCCGTTCAGGCCCGTGCCAAAGTCCAGAATCGCGCCAACGTCCTTCAGCTCAAGCTCATTGGACAGAGTCACCCGACTGGTCTCACATCGAATCTATTAAAGCTGTTTGAGCCAAGGCCTCCTTTGGAGTATAAACCACCTCCAGAGAAAAGAAAATGTCCACCATTAACAGGGATGGCACAATTTGTGACTAAGTTTGCTGAGCCTGGTGACCCCGAATATGCTCCGCCTGTCAAAGAAGCAGAAACTCCTGCACAGAAAAAAACCAGAATACACAAGCTCAAACTAGAGGCAGGAGCAGCGATGGCTGCTGAGGAGCTAGAGAAATATGATCCACATAATGACCCAAATGTATCTGGAGATCCGTACAAGACATTGTTTGTGGCCAAACTCAGTTACGAGACCACGGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTTCTGACAAAACGACAAATAAGCCTAGGGGTTATGCTTTCATTGAGTACCTGCATACAAGAGATATGAAAGCTGCTTATAAGCAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTCGATGTTGAACGTGGGAGAACTGTTCCAAATTGGCGCCCTCGCCGCCTAGGTGGTGGGCTTGGTACTACCAGAATTGGGGGTGAAGAACTTAATCAGAAACATTCTGGGAGCATGCTTTGTTTGTTCTTTCTGTTGAAGGCGAATTGTGACATGACTTCATTTTTCAGAGAGCAACAACAATCTCGTTCTGAAGAACCAAGAGCGCGGGAGGAAGCACTTGGTGATCAGGACAGGGAAAAATCACGTGAAAGAGTCAGGGACAGAGATAGAGAACGAGAGCGATCACGTGAACAATCTCATGAAAAGGGCAGGGATCGTGACCATAGAGAGGATAGGCACCGCAGAGATCGGGATAGGAATAGGGAAAGAGTCAGGGAAAGAGAAAGTGATAGAGACCGTGGTCGTGATAGAGATAGAGGACGTGAGCGAGAAAGGGGCCATGATCGAGACAGAGATCATGATCGACATCATGGAAGGGATAGAGACTACGAAGTCGAAGATACTGATCGGGGACGCTCACGTGACAGGGACCCTGATTATGACCGTGTTGAATCTAAACACGGGAGGGACCGACATGTTGAAAAAGAGCGTGACTATGAGCCTGAGGATGATCATGGTCTGTATAACCAATCTGAGCATAGGCATAGGCATGTCGATCTTGATCATGATCCTGAGCAGTATGATCACTATGAGCATCATCGAGGACGAGGTCAGTATGATGATGGAGATGACGAAGATGACCACTACAATCAATATCCTGACCATGATAAGATAGAAGATGATCACCACACAGGACGTGCAACATCTGAATCACGTGAGGAGAGAAATCGTGATGCCGACCGTGAATATCATCACTCAGAGAGATCCCGTTCTCGGGAGTATGATTACTAG 1614 0.4696 MINTHNPFFPFSGSDSVITSLSVSAPTTTMGDFNNDPLLRNQNAAVQARAKVQNRANVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVTKFAEPGDPEYAPPVKEAETPAQKKTRIHKLKLEAGAAMAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVSDKTTNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRIGGEELNQKHSGSMLCLFFLLKANCDMTSFFREQQQSRSEEPRAREEALGDQDREKSRERVRDRDRERERSREQSHEKGRDRDHREDRHRRDRDRNRERVRERESDRDRGRDRDRGRERERGHDRDRDHDRHHGRDRDYEVEDTDRGRSRDRDPDYDRVESKHGRDRHVEKERDYEPEDDHGLYNQSEHRHRHVDLDHDPEQYDHYEHHRGRGQYDDGDDEDDHYNQYPDHDKIEDDHHTGRATSESREERNRDADREYHHSERSRSREYDY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0176 537 MobiDBLite consensus disorder prediction 301 537 - -
Lal16g0176 537 CDD RRM_snRNP70 167 257 IPR034143 GO:0030619
Lal16g0176 537 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 71 159 IPR022023 -
Lal16g0176 537 PANTHER - 30 404 - -
Lal16g0176 537 Gene3D - 155 279 IPR012677 -
Lal16g0176 537 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 30 404 - -
Lal16g0176 537 SUPERFAMILY RNA-binding domain, RBD 156 268 IPR035979 GO:0003676
Lal16g0176 537 MobiDBLite consensus disorder prediction 298 537 - -
Lal16g0176 537 SMART rrm1_1 169 242 IPR000504 GO:0003723
Lal16g0176 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 239 IPR000504 GO:0003723
Lal16g0176 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 246 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0176 Lal-Chr16 1056578 1061770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0176 168 241 C2H2 Transcription Factor Family AT2G19380 31.081 3.81e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0176 K11093 - gmx:100814484 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0176 16 1056578 1061770 Lal23g1578 23 15761993 15766401 LSH