Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0169 ATGCATCATTTTTGCAGTGACAATCATCAGGGCCACGTATTGGGACACTGCACATGTGGCATTTACCATAGCCAAACCACTCCATACTCTATGTTATTCTCCATGCCAAACCACAAACCCTATGAATATGATCATCATGAATCTGACATGTATTCGTTCACTACTACTCCATCTTCATCAGATGTGGACTGTACTCTTTCACTTGGAACCCCTTCTACCCGTTCTGTGGAAGATGAAGAGAGGCAAAGTCACCATGAACGTCGATCTGTTTCGAACTTTTGCTGGAATTTATTACAACCCAAATACAGCACTAAGTCACAAACCAAGGCTAGCAGCAGATGCAGCAATAGTAACAATACAAATGACTCTATCCTTCGTCGTCGCTGCGCCAACTGCGACACCACTTCAACACCCCTTTGGAGGAATGGACCTCAAGGCCCGAAGTCACTTTGTAATGCGTGTGGGATCAGATTCAAAAAAGAAGAGAGAAGAGCAAGTGCTGCTGCAGTCACGCCCACGGCGGCGTCATGCGGTGTAGTAGATTCGGCGCAGATGTACAGTCACCATAACAACTCATGGTATTCCCAGTCGCAGAGCCAGAAGATGCAGTGCCTCTCGCCTGCAATTGGGAACGAGTTCCGGTTCATGGATGACGCCAATCGAGATTCCGAGAACGGCATTCCGTTCCTCTCTTGGAGATTCAATGTCGCGGACACAACAAGTTTCGTTCACGATTTTACAGGATGA 747 0.4712 MHHFCSDNHQGHVLGHCTCGIYHSQTTPYSMLFSMPNHKPYEYDHHESDMYSFTTTPSSSDVDCTLSLGTPSTRSVEDEERQSHHERRSVSNFCWNLLQPKYSTKSQTKASSRCSNSNNTNDSILRRRCANCDTTSTPLWRNGPQGPKSLCNACGIRFKKEERRASAAAVTPTAASCGVVDSAQMYSHHNNSWYSQSQSQKMQCLSPAIGNEFRFMDDANRDSENGIPFLSWRFNVADTTSFVHDFTG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0169 248 PANTHER GATA TRANSCRIPTION FACTOR 18 1 245 IPR044272 GO:0003700|GO:0009908
Lal16g0169 248 Gene3D - 125 203 IPR013088 GO:0006355|GO:0008270
Lal16g0169 248 PANTHER GATA TRANSCRIPTION FACTOR 18 1 245 - -
Lal16g0169 248 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Lal16g0169 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 169 - -
Lal16g0169 248 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Lal16g0169 248 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Lal16g0169 248 SMART GATA_3 123 176 IPR000679 GO:0006355|GO:0043565
Lal16g0169 248 ProSiteProfiles GATA-type zinc finger domain profile. 127 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0169 Lal-Chr16 1023101 1025180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0169 29 247 C2C2-Gata Transcription Factor Family AT3G50870 43.590 2.60e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal16g0169 GATA 4.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0169 - - gmx:100790571 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0169 16 1023101 1025180 Lal15g0126 15 880071 882252 LSH
Lal16g0169 16 1023101 1025180 Lal23g1414 23 14682246 14683505 LSH