Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0166 ATGTCATTGAAAAGCATAGTACGAGAACTCAAGGAGATGAGGGATGGTATTGGTAGCATATCAAGGCGAGGTGCAGAAAGCAAGCATTGGCACAGTCGTATGAAGTCACACATAGTTCCTGATGTCACAGTAACCCCACTCGAAAATATTCTACAGGGACCATGGGCAAATCTACCTCCTGAATTGCTTCTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGCGCTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCATGGAGGGCCGTTACAAAAGAGATTGTTAAGACTCCAGAGCAATGTGGAAGGCTCACATTTCCTATTTCATTGAAGCAGCCGGGTTCTCGTGAATCTCCAATACAATGCTTTATCAGGAGGAAGAGAGAAACTTCTACATTTCTGTTGTACTATGGTCTGGTGCCATCGGAGAATGAGACTGATAAATTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACAGACTTTGTCATATCTTTAGTTGCAGATGAGTTTTCTAGGTCTAATTTTTTGGGGACCAAGTTCACTATATATGACAGCCAGCCTCCATGTGACACTGGAATTCAACCAAATAGCCGTTCTTGTAGGAGATTTCAGTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATAGCTTATGAGCTCAATGTTCTCCGTTCAAGAGGGCCAAGAAGAATGCATTGCACCATGAACTCCATACCTGTGTCAGCTATTCAGGAAGGGGGCAATGCTCCAACTCCCATTTCTTTACCACAAGTTATTGATGAACATTTTTCTCCCTCACCAGCATTAAAAGGAAAAGGTCCAGTTACAGATTTAAGCTCTGCAAGCCTCACAGAGCTACCGGTTCAGCACCAAGGCTCAGTTGAGCCTCTTGTACTTAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCGTCTGTTAAGAACTTTCAACTTGTGGCTGCGGTAGATCCTGCTCATAATGTTTCTGCTGCAGAACAAGAAAAGGTAATCTTGCAGTTTGGAAAGATAGGAAAAGACATATTTACCATGGATTACCGTTATCCACTCTCTGCATTCCAAGCCTTTGCAATATGCTTAAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1215 0.4387 MSLKSIVRELKEMRDGIGSISRRGAESKHWHSRMKSHIVPDVTVTPLENILQGPWANLPPELLLDIIRRVEESETSWPARAVIVSCASVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGSRESPIQCFIRRKRETSTFLLYYGLVPSENETDKLLLAAKRIRRATGTDFVISLVADEFSRSNFLGTKFTIYDSQPPCDTGIQPNSRSCRRFQSKQVSPRVPACNYVVSTIAYELNVLRSRGPRRMHCTMNSIPVSAIQEGGNAPTPISLPQVIDEHFSPSPALKGKGPVTDLSSASLTELPVQHQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPAHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0166 404 ProSitePatterns Tub family signature 1. 332 345 IPR018066 -
Lal16g0166 404 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Lal16g0166 404 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Lal16g0166 404 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Lal16g0166 404 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Lal16g0166 404 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Lal16g0166 404 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Lal16g0166 404 PANTHER TUBBY-RELATED 1 404 - -
Lal16g0166 404 Pfam Tub family 116 399 IPR000007 -
Lal16g0166 404 SUPERFAMILY Tubby C-terminal domain-like 104 404 IPR025659 -
Lal16g0166 404 Gene3D Tubby Protein; Chain A 113 404 IPR025659 -
Lal16g0166 404 Pfam F-box domain 55 102 IPR001810 GO:0005515
Lal16g0166 404 ProSitePatterns Tub family signature 2. 389 404 IPR018066 -
Lal16g0166 404 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 404 - -
Lal16g0166 404 Gene3D - 48 103 - -
Lal16g0166 404 SUPERFAMILY F-box domain 53 98 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0166 Lal-Chr16 1011972 1015317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0166 1 404 TUB Transcription Factor Family AT2G18280 63.702 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal16g0166 Tub 7.1e-93 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0166 K19600 - gmx:100798958 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0166 16 1011972 1015317 Lal15g0122 15 860230 863306 LSH
Lal16g0166 16 1011972 1015317 Lal23g1422 23 14724574 14728035 LSH