Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0150 ATGCTTTACCAAACTCCCCTTCCCTTCTCCACTTTCAATTTCATCCTTTCTTCTTCTTCTTCCATCTCTTCCCTTCAAACTGCATCTTCTCTTCCACTCTCTAAGGTTGATACAGAAATGGATTGCATTGAAGGTGCGTTAAAGACCAGTTTAAGGAAAGACTCGACTGTCAAATTGAGCCCACAAACCTTCATGGAGGATTTGAATGTGCAAATTGGCACACCTTGTGAAGATTTTTTATTTGTGGATAATCTCCTTGACTTCTCATATGTGGAACAACAACAAGACGAAGAAGAACCGAAACAACAACAACAACAACAACAACACAAGGAAGGTGAAGATGAATGTGTCTCCCCTCACAAAAGCAACGATATTTGTAACCTTTCTCTCAAAGACGAGTTTCTTTCCATGCCCAATAGCGACCTCAGTGTTCCGGAGGATGTTGCAGACTTGGAGTGGTTATCTCATTTTGTTGAGGATTCCTTCTCCGAATTCCCCACCGTATCCACCACAACCACGAGGGAGAAAGAAGAAAAGCCGTTAAACCCGGTTTATATTCAACCATGTTTCAAAATCCCGGTTCCAGCAAAGGCAAGAAGCAAACGAACCCGGTCGGGTATTCGGGTTTGGTCACTCGGTTCACGTTGCTTCACTGAGTCATCTTCAAGCTCCACTTCCTCCACCTCCTCCTCTTCTTCCCCAACAAGTACTTTGCTAAATTACGCCGACTTGGTCCAAAACCTCGACCATGTTTGTTCTCCGTCGAAAAAACCGATGAAAAGGGTATCATCTCACGGTTCCGTCCAGACCCCGCGACGGTGCACCCATTGCGGCGTTCAGAAAACTCCTCAGTGGCGAACTGGGCCGCTGGGAGCTAAAACTCTCTGCAACGCTTGTGGGGTCAGGTTCAAGTCGGGTCGGCTCTTACCCGAATACAGGCCTGCTTGTAGCCCTACGTTTAAAAGTGAAATGCACTCCAATCACCACCGCAAAGTGCTCGAGATGCGCCGGAAGAAGGAGGACACCGGTGGTGTTGACACCGGTTTTGAATCTCCTCCGGTGGTCCCCACTTTTTGA 1077 0.4726 MLYQTPLPFSTFNFILSSSSSISSLQTASSLPLSKVDTEMDCIEGALKTSLRKDSTVKLSPQTFMEDLNVQIGTPCEDFLFVDNLLDFSYVEQQQDEEEPKQQQQQQQHKEGEDECVSPHKSNDICNLSLKDEFLSMPNSDLSVPEDVADLEWLSHFVEDSFSEFPTVSTTTTREKEEKPLNPVYIQPCFKIPVPAKARSKRTRSGIRVWSLGSRCFTESSSSSTSSTSSSSSPTSTLLNYADLVQNLDHVCSPSKKPMKRVSSHGSVQTPRRCTHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFKSEMHSNHHRKVLEMRRKKEDTGGVDTGFESPPVVPTF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0150 358 PANTHER GATA TRANSCRIPTION FACTOR 40 342 - -
Lal16g0150 358 MobiDBLite consensus disorder prediction 337 358 - -
Lal16g0150 358 SMART GATA_3 268 322 IPR000679 GO:0006355|GO:0043565
Lal16g0150 358 ProSiteProfiles GATA-type zinc finger domain profile. 268 304 IPR000679 GO:0006355|GO:0043565
Lal16g0150 358 Pfam GATA zinc finger 274 308 IPR000679 GO:0006355|GO:0043565
Lal16g0150 358 MobiDBLite consensus disorder prediction 93 120 - -
Lal16g0150 358 ProSitePatterns GATA-type zinc finger domain. 274 299 IPR000679 GO:0006355|GO:0043565
Lal16g0150 358 MobiDBLite consensus disorder prediction 253 273 - -
Lal16g0150 358 PANTHER GATA TRANSCRIPTION FACTOR 40 342 - -
Lal16g0150 358 MobiDBLite consensus disorder prediction 94 120 - -
Lal16g0150 358 Gene3D - 265 341 IPR013088 GO:0006355|GO:0008270
Lal16g0150 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 268 330 - -
Lal16g0150 358 CDD ZnF_GATA 273 329 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0150 Lal-Chr16 911195 913838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0150 44 358 C2C2-Gata Transcription Factor Family AT5G66320 46.064 7.45e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal16g0150 GATA 7.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0150 - - aprc:113869559 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0150 16 911195 913838 Lal23g1448 23 14864639 14866797 LSH