Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0148 ATGGAACAACAACCACCTCTCCTGAATCAAGGTGCTGCTAGGGATTTCAAGGATCTAACTCTTGCGGAGGATAAAGAGAGTAATTTAGACGGCACCGTTTTGAAAAAGAAACGTGGTCGTCCAGCTAGGGGTACTCCCAAGAAGGAAGAAGAAGATGTTTGCTTTATTTGCTTTGACGGTGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGCCCTAAAGCATATCATCCTGCGTGTATTAAACGAGATGAAGCTTTTTTCAGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGTGTGTGTCGGAAGGCATCCCATTATATGTGCTACACTTGTACATATTCTTTGTGTAAGGGCTGTACAAAAACCACTGATTTTGTCAGTGTCAGAGGAAATAAAGGCTTTTGTGGACTATGCATGAAAACTATAATGCTGATCGAGAATAATGCCCAGGGAAACGATGCAAAGTGTGAAGTGGATTTCGATGACACAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACAGCTTTGAAAAGGGACACATCTTTAACATTGGATGAGCTCCTTCAAGCTAAAAACCCATTTAGGGCTCTGAGTTGTAAGCTGGGAACTCCACATGAAGTTTATCATGTTAAAGATGATAAAGGTTCTGGATCTAAAAACTCCTGTGTAGACATAGAATCAGATAATTTAAATAACAAGAAGCCTAAGAGAGGTGATGCACATATACATGTTGTGGATGGTATCATGAATGATGTTAGATGTCGCACAGAAGACTTGCCCATTACGCGTGATCTGATCGGTGGTATATGTGTACACAACAATCAGATCAACCCTAGTGATGCATCAATTGGTGATATCACTAATATAGGAGTTGTGAGATCAGAATCGTCTGATGTCGCATTGGACATGTCATCATTGCTTCTCTCTACAGGGATTGAGAAGTCACTTGCTGATTCTGTGAATGATAAATTGTGGCATTATCAAGATCCAGCTGGGAAGGTTCAAGGGCCTTTTGCTATGTTGCAGTTGTACAAGTGGAAAGCAAGTGGGCATTTTCCTTCAGATCTGAGAATATGGAGGATAGATGAGAAACAAGATTACTCTAGATTGTTAACTGATGCACTAGATGGGAAGTGTTCCAAAAATGTGTTATTGCCACACAACAGTCAACTGCTGTCGTTAGGACCCAGTGTCACTTTTGATGATAAAGATAATAGTCAGGAGAGTGGGAGAAATGCATCAAGGAATGAAATTCACAGAGAGAGACGAGTTATCGAGCAGTGTGGGGAGCAAAAGGTGTATGATACTTGTACACAGTCCAATGGTAAAGATGAATCTGTTAGGAGCAACAAATGGAATTCTTATTCTTCCACACCAGCAGATGGGATTAACAATGAAGGGCACAGTGGAAACTTAGAAGGGAGAGAAGAGTCATCGAAATGCATAAATTCTTGTCACAACCAGCCCCGTGTATACCCCTCACTACCTTCAACTGCTTTTTCTGTGAATTTGAATGAGAACCCTTTAGATAAATTAAGGGAAGGTTATGGGATTGAGGCAAACCCTGAAGATAATGGAAATTATGGCTTGAATAGGATTTCTGAAGATCAGGGTAATAGTGGGCAGAGATACCAGAAACAGTCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGTCAGAACTGGGAATGCCCTCAAGTAATTAATCCAGTGTGTAATGCATCGACATGGCTGTCAATCTTTGGTGAACCTACTGATTGTGATGAATCAGTTTCAGATCTATTGGCGGAAGTGGAGGCAATGGAGTCACGTGGTGGCGGTGTGGAATCTCCCACTTCAATCATGAAAGGTGTTGAGGAATTAACTGCTGGTTCTAAAACTGATTTTCTTAGTTTTGTAGATGGGTTTAGCTCAATGCTTGATGCAAGTAAAGGTGATGCACTGACCTCTACCATTGATTTACACTTGCCATCTCAACCCACAGCAGCAGCGGAACCATTTCGTCGAACTGATGCATTTCATAATCCTCAAAGAATATCTGGGGTGAATTCCTCAAGATATTCTGAAGTTGAGGTTGATGAGGCAGATAGGATCGGAGGCCATTCTTGA 2121 0.4177 MEQQPPLLNQGAARDFKDLTLAEDKESNLDGTVLKKKRGRPARGTPKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFSSKAKWNCGWHICSVCRKASHYMCYTCTYSLCKGCTKTTDFVSVRGNKGFCGLCMKTIMLIENNAQGNDAKCEVDFDDTSSWEYLFKVYWTALKRDTSLTLDELLQAKNPFRALSCKLGTPHEVYHVKDDKGSGSKNSCVDIESDNLNNKKPKRGDAHIHVVDGIMNDVRCRTEDLPITRDLIGGICVHNNQINPSDASIGDITNIGVVRSESSDVALDMSSLLLSTGIEKSLADSVNDKLWHYQDPAGKVQGPFAMLQLYKWKASGHFPSDLRIWRIDEKQDYSRLLTDALDGKCSKNVLLPHNSQLLSLGPSVTFDDKDNSQESGRNASRNEIHRERRVIEQCGEQKVYDTCTQSNGKDESVRSNKWNSYSSTPADGINNEGHSGNLEGREESSKCINSCHNQPRVYPSLPSTAFSVNLNENPLDKLREGYGIEANPEDNGNYGLNRISEDQGNSGQRYQKQSDSEENSGQSSGQNWECPQVINPVCNASTWLSIFGEPTDCDESVSDLLAEVEAMESRGGGVESPTSIMKGVEELTAGSKTDFLSFVDGFSSMLDASKGDALTSTIDLHLPSQPTAAAEPFRRTDAFHNPQRISGVNSSRYSEVEVDEADRIGGHS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0148 706 CDD GYF 326 379 IPR003169 GO:0005515
Lal16g0148 706 Pfam GYF domain 329 371 IPR003169 GO:0005515
Lal16g0148 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 142 IPR013083 -
Lal16g0148 706 MobiDBLite consensus disorder prediction 408 426 - -
Lal16g0148 706 MobiDBLite consensus disorder prediction 440 480 - -
Lal16g0148 706 ProSiteProfiles GYF domain profile. 326 380 IPR003169 GO:0005515
Lal16g0148 706 MobiDBLite consensus disorder prediction 671 706 - -
Lal16g0148 706 ProSitePatterns Zinc finger PHD-type signature. 54 114 IPR019786 -
Lal16g0148 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 308 574 - -
Lal16g0148 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 25 245 - -
Lal16g0148 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 573 698 - -
Lal16g0148 706 MobiDBLite consensus disorder prediction 399 426 - -
Lal16g0148 706 SUPERFAMILY GYF domain 323 379 IPR035445 -
Lal16g0148 706 SMART PHD_3 53 99 IPR001965 -
Lal16g0148 706 MobiDBLite consensus disorder prediction 531 566 - -
Lal16g0148 706 Gene3D - 328 384 IPR035445 -
Lal16g0148 706 ProSiteProfiles Zinc finger PHD-type profile. 51 117 IPR019787 -
Lal16g0148 706 SUPERFAMILY FYVE/PHD zinc finger 49 106 IPR011011 -
Lal16g0148 706 SMART gyf_5 327 382 IPR003169 GO:0005515
Lal16g0148 706 CDD PHD5_NSD 53 98 - -
Lal16g0148 706 MobiDBLite consensus disorder prediction 440 469 - -
Lal16g0148 706 MobiDBLite consensus disorder prediction 520 566 - -
Lal16g0148 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 308 574 - -
Lal16g0148 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 25 245 - -
Lal16g0148 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 573 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0148 Lal-Chr16 901885 905552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0148 51 124 PHD Transcription Factor Family AT4G14920 36.486 4.46e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0148 - - aip:107642933 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0148 16 901885 905552 Lal15g0110 15 776809 783039 LSH