Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0143 ATGGGACGAGTAATCAGAGCACAACGTAAGGGTGCGGGTTCCGTCTTCAAGTCTCACACCCACCACCGTAAGGGTCCAGCACGGTTCCGAAGTCTCGACTTCGGTGAGCGAAATGGTTACCTGAAAGGTGTTGTTACCGATATCATCCACGACCCAGGTCGCGGTGCCCCTCTCGCTAAGGTCACTTTCCGCCACCCTTTCCGTTACAAGAAGCAGCAAGAACTGTTCGTTGCCGCTGAGGGTTTGTACACTGGTCAGTTCTTGTATTGTGGTAAGAAAGCTACACTTGTTGTTGGAAATGTTTTGCCTCTCAGATCTATTCCTGAAGGAGCTGTCATCTGCAACGTTGAACATCACGTTGGGGATCGCGGTGTCTTTGCTCGGTGTTCTGGTGATTATGCTATTGTTATCAGTCACAACCCTGATAACGATACATCTAGGATCAAGCTCCCATCTGGTTCCAAGAAGATTGTTCCAAGTGCTTGCAGGGCCATGATTGGGCAAGTTGCAGGTGGAGGCAGAACTGAGAAGCCACTTCTTAAGGCTGGTAATGCTTACCACAAGTTCAGGGTCAAGAGAAACTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCATGGAGGAGGTAACCACCAGCATATTGGTCATGCAAGTACCGTTAGACGTGATGCTCCTCCCGGCCAGAAGGTTGGTCTCATTGCTGCCAAGCGTACTGGTCGTCTCAGGGGACAAGCTGCTTCTGCTGCCTCCAAAGCTGATAAGACTACTTAA 786 0.5038 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQQELFVAAEGLYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKIVPSACRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAASAASKADKTT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0143 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 MobiDBLite consensus disorder prediction 210 261 - -
Lal16g0143 261 PANTHER RIBOSOMAL PROTEIN L2 1 259 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 Gene3D - 1 86 IPR012340 -
Lal16g0143 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Lal16g0143 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Lal16g0143 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 PANTHER 60S RIBOSOMAL PROTEIN L8 1 259 - -
Lal16g0143 261 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lal16g0143 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 89 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lal16g0143 261 Gene3D - 90 169 IPR014722 -
Lal16g0143 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0143 Lal-Chr16 856789 858572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0143 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.798 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0143 K02938 - mnt:21409345 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0143 16 856789 858572 Lal15g0102 15 711156 713059 LSH
Lal16g0143 16 856789 858572 Lal23g0301 23 3438305 3440800 PCT
Lal23g0301 23 3438305 3440800 Lal16g0143 16 856789 858572 PCT