Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0142 ATGGAAGCTCAACAACACTCACCAAATGAGGATGGTGGCAGTGGAAAAGGGGGATTTATGAGCAGGCAAAGTAATACAAGGTGGACTCCAACAACAGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATAAGATCCCCAAGTGCTGAACAGATTCAAAGGATCTCTGCTAGGCTGAGGCAGTACGGCAAGATTGAAGGCAAGAATGTGTTTTATTGGTTCCAAAACCACAAAGCAAGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTCCCATGCAAAGATGCCCAACCAACACTGCTTCTGCTTGGAAACGTGAAGAGCCACCCATTCACACCAAGTTTCCTAACATAGCCTCTACTGGTGTCTCTTCTGCACCATCGTCTTCTGCTGCAATGGTTACTATGGGCCACATGGGGAATTATGGGTATGGATCTGTGCCCATGGAAAAGAGTTTTAGGGACTGCTCAATATCAGCGGGAGGTAGCAGTGGCCATGTTGGTGGAGCTATAAACCAAAATTTGGGATATTTTGATATGGAACAATATTCTTCAGGCTACACCACTTTCTTTGACAAAGTAAGGCCAGGTGGAGAAACCATGGAAGAAGAACAAGTAGAAGATGGTTCACCTGAGATTCAAACACTCCCTCTATTCCCTGTGCACTGTGAAGACGTCCATGGCTATTGCAACCTCAGGTCTAATTCTTCTAATTGTGTTGGTGGCTGGTATCAGACAGAAGAAAGTTTCATGAATGGTTCCCGTGCTTCCTTGGAACTCAGTCTCAACTTCTACACCCGCAAATCTCCAGAATACTCTTGA 831 0.444 MEAQQHSPNEDGGSGKGGFMSRQSNTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRCPTNTASAWKREEPPIHTKFPNIASTGVSSAPSSSAAMVTMGHMGNYGYGSVPMEKSFRDCSISAGGSSGHVGGAINQNLGYFDMEQYSSGYTTFFDKVRPGGETMEEEQVEDGSPEIQTLPLFPVHCEDVHGYCNLRSNSSNCVGGWYQTEESFMNGSRASLELSLNFYTRKSPEYS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0142 276 ProSiteProfiles 'Homeobox' domain profile. 21 87 IPR001356 GO:0003677
Lal16g0142 276 MobiDBLite consensus disorder prediction 1 31 - -
Lal16g0142 276 Gene3D - 20 86 - -
Lal16g0142 276 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 270 IPR044555 GO:0003700|GO:0099402
Lal16g0142 276 Pfam Homeodomain 25 86 IPR001356 GO:0003677
Lal16g0142 276 CDD homeodomain 26 88 IPR001356 GO:0003677
Lal16g0142 276 PANTHER PROTEIN WUSCHEL 1 270 - -
Lal16g0142 276 SMART HOX_1 23 91 IPR001356 GO:0003677
Lal16g0142 276 SUPERFAMILY Homeodomain-like 18 92 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0142 Lal-Chr16 851954 853407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0142 19 228 Wox Gene Family AT2G17950 42.629 9.70e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal16g0142 Homeodomain 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0142 - - vra:106776674 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0142 16 851954 853407 Lal15g0101 15 707484 708935 LSH
Lal16g0142 16 851954 853407 Lal23g1463 23 14984720 14986140 LSH