Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0140 ATGGGTATCTGTTTTTCCACCGCAAAGGTGAGTGGCTCCAACAGCAACAATAATAATAACAACAACACCGCCGCCGCCGCTGGCAACAACGCCACCACTTCCACCGCTACAGCAAATCATAATCGTAAGTGGAGTTCGAAGACGCAATCCGATGTGTCAACCACGATGGTGAGTATCCAGAAGCAGCAGCAACCGTTAACCTGTGGTCAACGGCAGAAGGTAAAGGAAGAGAGTCAGAATCATAATCATAGAACAAAAGACAAGGTTTCTTCGAGGCGCCATGTGGGGCACGTGGCATGTGGAAAGCGCACAGATTTCGGTTATGATAAAGATTTTGATATAAAATTCTCGCTTGGGAAATTGTTGGGGCATGGACAATTTGGCTACACCTATGTTGGAATTGATAAAGCCAATGGGGATCGTGTTGCCGTTAAGAGACTCGAGAAGAACAAGATGGTTCTCCCTATAGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCTTTCGAGAATGATTCATATGTGTACATAGTTATGGAGTTATGCGAGGGTGGAGAACTGCTAGACCGTATATTGTCCAAGAAGGACAGCCGGTATACTGAAAAGGATGCCGCTGTTGTTGTAAGGCAGATGCTTAAGGTTGCAGCTGAGTGTCATTTACATGGCTTGGTACATAGGGACATGAAGCCAGAGAATTTTCTTTTCAAATCAACTAAAGATGATTCATCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATTAAACCTGGAAAGAGGTTTACAGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTTTTAAAACGGAAGTCAGGCCCTGAATCAGATGCATGGAGCATTGGTGTGATCACATACATATTGCTTTGTGGTAGACGCCCATTTTGGGATAAGACTGAGGATGGTATTTTCAAAGAGGTGTTGCGGAACAAGCCTGATTTCCGCCGGAAGCCATGGCCAACAATAAGTAATGCCGCTAAAGATTTTGTGAAGAAATTGTTGGTAAAGGACCCTCGTGCAAGATTAACTGCTGCCCAGGCTCTATCACATCCATGGGTTAAAGAAGGAGGGGAGGCATTGGAGATTCCTATTGATATATCTGTCCTGAGTAACATGCGACAATTTGTGAAGTATAGTCGATTGAAACAGTTTGCACTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTGCCATTAGCCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTTGAGATACTGCAAGCGATAGATAGCAACACGGATGGGCTGGTGGATTTCACTGAGTTTGTAGCAGCTGCATTGCATGTGCATCAATTGGAAGAACATGATTCTGAGAAGTGGCAAGAACGGTCCCAGGCTGCTTTTGAGAAATTTGACTTGGATAAGGATGGGTATATTACTCGAGATGAACTTAGAGTGCATACATGCCTGAAAGGCTCCATTGATCCATTGCTTGAGGAAGCGGATATTGACAAAGATGGAAAGATTAGCCTACCAGAATTTCGGAGACTTCTAAGAACTGCAAGCATTGGTTCTCGTAACATGGTGAGCCCACACAGCCGTCAGCGGAAGATATAG 1734 0.436 MGICFSTAKVSGSNSNNNNNNNTAAAAGNNATTSTATANHNRKWSSKTQSDVSTTMVSIQKQQQPLTCGQRQKVKEESQNHNHRTKDKVSSRRHVGHVACGKRTDFGYDKDFDIKFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKNKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFENDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKDDSSLKATDFGLSDFIKPGKRFTDIVGSAYYVAPEVLKRKSGPESDAWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVKEGGEALEIPIDISVLSNMRQFVKYSRLKQFALRALASTLNEEELSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAAALHVHQLEEHDSEKWQERSQAAFEKFDLDKDGYITRDELRVHTCLKGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNMVSPHSRQRKI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0140 577 Gene3D Phosphorylase Kinase; domain 1 110 201 - -
Lal16g0140 577 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Lal16g0140 577 SUPERFAMILY Protein kinase-like (PK-like) 115 391 IPR011009 -
Lal16g0140 577 CDD STKc_CAMK 115 375 - -
Lal16g0140 577 Pfam EF-hand domain pair 504 557 IPR002048 GO:0005509
Lal16g0140 577 Pfam EF-hand domain pair 422 484 IPR002048 GO:0005509
Lal16g0140 577 SUPERFAMILY EF-hand 408 559 IPR011992 -
Lal16g0140 577 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0140 577 Pfam Protein kinase domain 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0140 577 Gene3D - 417 486 - -
Lal16g0140 577 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Lal16g0140 577 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Lal16g0140 577 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 45 567 - -
Lal16g0140 577 ProSiteProfiles EF-hand calcium-binding domain profile. 536 563 IPR002048 GO:0005509
Lal16g0140 577 Gene3D - 396 556 - -
Lal16g0140 577 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Lal16g0140 577 Gene3D Transferase(Phosphotransferase) domain 1 202 395 - -
Lal16g0140 577 ProSiteProfiles EF-hand calcium-binding domain profile. 498 533 IPR002048 GO:0005509
Lal16g0140 577 SMART serkin_6 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0140 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lal16g0140 577 ProSitePatterns EF-hand calcium-binding domain. 541 553 IPR018247 -
Lal16g0140 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 567 - -
Lal16g0140 577 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Lal16g0140 577 MobiDBLite consensus disorder prediction 1 94 - -
Lal16g0140 577 MobiDBLite consensus disorder prediction 7 73 - -
Lal16g0140 577 SMART efh_1 502 530 IPR002048 GO:0005509
Lal16g0140 577 SMART efh_1 423 451 IPR002048 GO:0005509
Lal16g0140 577 SMART efh_1 460 488 IPR002048 GO:0005509
Lal16g0140 577 SMART efh_1 532 560 IPR002048 GO:0005509
Lal16g0140 577 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0140 Lal-Chr16 831878 837715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0140 1 570 EF-hand Containing Proteins AT2G17890 73.958 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal16g0140 Pkinase 2.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0140 K13412 - gmx:100817249 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0140 16 831878 837715 Lal15g0098 15 660842 666118 LSH