Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0139 ATGTTCGCTTCTGCATCTTTTCCTTCATCTCTCTCTGCCACTAATTTCTCCGGCAACGCCGTGGCTCCTCCGCCATGCCGCGTCAGATCACGTCCAATAGTAGCTTTTGCCACAGCCACCGCTACCTCCACCGCTGAAGCTCGCTCTACCTGGACGGAGCAACCTAGGTATCCTTCGTATCTGAACCAACACGGCATTTCCTCTGCATCGCTCTATGAGATTCTAGGCATTCCTGCCGCCGCCTCCGATCAGGAAATAAAGGCAGCGTACCGGCGTTTGGCCAGGGTTTGCCACCCCGATGTAGCCGCAATCGATCGGAAGAAATCGTCGGCGGACGAGTTTATGAAGATTCATACCGCGTACTCCACCCTTTCTGATCCTGAAAAGCGCGCCACTTACGATCGTAGCCTCTTACGCCGGAGACAACAACCGTTGTCTACGATATCTATAGTTTCGGGCTACACGAGCCGGAACTGGGAAACAGACCAGTGCTGGTAG 498 0.5422 MFASASFPSSLSATNFSGNAVAPPPCRVRSRPIVAFATATATSTAEARSTWTEQPRYPSYLNQHGISSASLYEILGIPAAASDQEIKAAYRRLARVCHPDVAAIDRKKSSADEFMKIHTAYSTLSDPEKRATYDRSLLRRRQQPLSTISIVSGYTSRNWETDQCW 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0139 165 CDD DnaJ 72 126 IPR001623 -
Lal16g0139 165 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Lal16g0139 165 SUPERFAMILY Chaperone J-domain 33 133 IPR036869 -
Lal16g0139 165 Gene3D DnaJ domain 59 155 IPR036869 -
Lal16g0139 165 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Lal16g0139 165 PANTHER - 1 165 - -
Lal16g0139 165 Pfam DnaJ domain 71 134 IPR001623 -
Lal16g0139 165 PRINTS DnaJ domain signature 72 90 IPR001623 -
Lal16g0139 165 PRINTS DnaJ domain signature 90 105 IPR001623 -
Lal16g0139 165 PRINTS DnaJ domain signature 109 129 IPR001623 -
Lal16g0139 165 SMART dnaj_3 69 129 IPR001623 -
Lal16g0139 165 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0139 Lal-Chr16 828250 828747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0139 72 134 C2H2 Transcription Factor Family AT1G74250 43.284 4.37e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0139 - - aip:107642575 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0139 16 828250 828747 Lal23g1470 23 15050988 15051491 LSH