Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0133 ATGGCAGAAGTCAGAGAAGAATCATGTTCTGAGAGTTCTATATTTTCATTAACGAATACCAAGTTCAGATACATGTTTGATAGATTATGTAATTCATGGAAGAAAAGTAGCAGACCAAATGGTCGAAGAATTTTCCACAGGGATGTTGAGAAAGAAGAATTCCAATATGCCAGTACTCATTGTCTCTCATCCTATTACAGTGTCTTTGTTGTTAGAGTAGCAATCATGGTGATGCTAGCCATCTTGATAGGGCTACTAACTATTTTGACATGGCATTTCACAAAGATTTATACAAAAAAATCACTTAATAGTTTGGCATATGGTCTGCGTTATGAACTTCTGCAACGTCCCATCTTGAGAATGTGGAACATTTTGAATTCCACTGCTGAAATTACCACAGCCCAGGTCAAGCTTTCTCAGTATGTGATCAGGCGTTACAGCAACCCTGCCTCTCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGCTGTAACATGGGCAATGTTTGTTAGTCGAAAAGCTCTCAACTCAATAACTATTAATTATAAAAATGGATTTGTTCAAGCATTCCATAGAGATCTGAAGGATAATAACACATTCTACATCTACTCTGATCTATCAAATTACTCCATAGGTTCCAGCAACTCAAATGAGATGGCTTCCTTTTTAACACATCAAGCTTGGGATGATAAAGCCATTCGTGGTAACAGGTCTGCGATTTGGTATCGCGAACCCCTTGACCCTCTCACAGGTCAGAAGATTGGAAAGGCTAAGCAAATTGCACCTGATGACTTGATCAACATAGCTGGCCTTTCACAGGTACCTGATGGTGTAGCTTCATGGCATGTTGCAGTGAGCAAGTTCACAGATTCACCTTTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGAGTATTATAGCAGTTGTTGGTGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAACTAGTTGAGTTGCACAGTGGTCATATGTATTTGACTTCTCAAGAGGGTTACTTGCTTGCAACTTCCACAAGTTCACCTCTACTCACAAATTCAACAAAGTCTCTTAAGCTTAAGATGCCTGTTGATTGTGAAGATGATGTAATACGACTCGGAGCTGAGTGGTTACAGAGAACTTATGGTGACAATTTTCCTGCGGGCGATGAGGTTCATGTAGAGAATGTCAAGCTAGGCCACCAGCAATATTACATTGACTCATTCTTCCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCCGCATTATGTATTCTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTTATAAATCAACTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAACATGAGTCACGAACTGAGGACACCTATGGCCGCAGTAATCGGATTGCTAGACATTCTTATATCTGATGACTGTCTAACAAATGAACAATATGCAACAGTCACTCAAATAAGGAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACCTGGGAAGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCAGATGATATACCAAACGTAGTCCGAGGGGATTCTGCTAGAGTAGTTCAAATTTTTACAAATTTGATCAATAATTCAATTAAGTTTACTCCATCGGGTCACATTATGCTGCGGGGATGGTGTGAAATCCCATACAGTGACAATCTAAGTTTTCCTCTAGAGGAGAAGAAATCATGTTGTGTACAAAACTCCAGAGAGAAGCAAAATGCAAACCATGCAAAGAGAATATCAAAGAAAGATATCAAAGTGAAACTTTGGTTTGAAGTTGATGACACAGGCTGTGGGATTGACCCAAGTAAATGGGATTCAGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACATGGTTAAAAAGATGGGTGGAGAAATCATGGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGAGGTTGTGCTTGCTTCTCAGTGCACCTATAGATGTCACAGAACAACATTGTGCAATAGATTTGACAAACAATGGCTTAGTGGTACTGCTTGCACTGCACGGAAACATGGGTCGATTTATTGCGTCCAAGTGGTTACAGAAAAACGGAGTTTGTACTATGGAAGCATCAGAATGGAATGGACTAACACATATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAGTTCATAATAATGACTTTGATGCACATTATCAAGTAAATGAGGGATTGAAGTCTAAATTACTTCACATACAAGATATGAGAAACCCCAATTTTGTCATTGTTGTAGACATTGACATACTTGACTTGAGCACAGATATTTGGAAGGAACAACTTAACTTCCTTTATAAGTACTTTGTTAAAGCAAAGTTTGTATGGATGCTAAATCATGACACTTCCAATACCATAAAGATGGAGCTCAGAAGAAAAGGGCATGTAGTCATGGTCAACAAACCTCTCTACAAGGCAAAAATTGTTCATATTTTGGAAGCTGTCATAAAGGAGAGGAATCTTGAGCTACAAAAGAAACACATGAGTGATCCAAGGACAACAATGAAAAAGGATGATTTGCATGAGTTTCTTGAGATTGATTCTACACATTTTGATGCTGCTACATCTGATGGTTCTGACATATCTGAAATGAGTGGTTCCAATCCTGCAAGTGCCAGTGTAGATAATAATTTGAGGAAAGAAGAGTCATGTTATAGCAGCCCAAATTCAAATAATGCCAGTGAAGATATTGAACTTAAACCACTGTCATGTAAAGAAATATCATTTCCAACAGAACCTGAAGTTAGAGAATCTGAATGTGGTGAAACAAATAAGGTGAGTAGTTCAAATAAAGTGGTAAATGGAAAGAAATCCCTTGAAGGGTTAAAGATATTGCTTGCAGAAGATACACCAGTTCTTCAAAGGGTAGCAACCATAATGCTTGAAAAGATGGGAGCTGCTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGATGCACTCAATTTCAAACTAGGTGTTGAAGATTGTAGAAGGGAATCTCTCCAGAAAGAAAGAAACACAAGATCTCAAAAAGATATTTTGACTAGCCCTTCATATGACTTGGTCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAGGCAATAAGGAAATCAGAAGTGGGAACAGGATTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCCAAATGCTTGGAAGTGGGTATGGATGCTTATTTAACAAAGCCAATTGACTTCAAGAAAATGGTGTATACCATTCTTGCACTCACTAAAAGAGAATGTTGA 3624 0.3913 MAEVREESCSESSIFSLTNTKFRYMFDRLCNSWKKSSRPNGRRIFHRDVEKEEFQYASTHCLSSYYSVFVVRVAIMVMLAILIGLLTILTWHFTKIYTKKSLNSLAYGLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRRYSNPASQAEQVELYEAMRAVTWAMFVSRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSIGSSNSNEMASFLTHQAWDDKAIRGNRSAIWYREPLDPLTGQKIGKAKQIAPDDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIIAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSSPLLTNSTKSLKLKMPVDCEDDVIRLGAEWLQRTYGDNFPAGDEVHVENVKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISAALCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDIPNVVRGDSARVVQIFTNLINNSIKFTPSGHIMLRGWCEIPYSDNLSFPLEEKKSCCVQNSREKQNANHAKRISKKDIKVKLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNMVKKMGGEIMVVKKEGPGTLMRLCLLLSAPIDVTEQHCAIDLTNNGLVVLLALHGNMGRFIASKWLQKNGVCTMEASEWNGLTHILRELFHARSSVHNNDFDAHYQVNEGLKSKLLHIQDMRNPNFVIVVDIDILDLSTDIWKEQLNFLYKYFVKAKFVWMLNHDTSNTIKMELRRKGHVVMVNKPLYKAKIVHILEAVIKERNLELQKKHMSDPRTTMKKDDLHEFLEIDSTHFDAATSDGSDISEMSGSNPASASVDNNLRKEESCYSSPNSNNASEDIELKPLSCKEISFPTEPEVRESECGETNKVSSSNKVVNGKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVDALNFKLGVEDCRRESLQKERNTRSQKDILTSPSYDLVLMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKKMVYTILALTKREC 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0133 1207 SUPERFAMILY CheY-like 1055 1204 IPR011006 -
Lal16g0133 1207 SMART HKATPase_4 610 760 IPR003594 -
Lal16g0133 1207 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 485 564 IPR036097 GO:0000155|GO:0007165
Lal16g0133 1207 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 610 758 IPR003594 -
Lal16g0133 1207 ProSiteProfiles Response regulatory domain profile. 1058 1203 IPR001789 GO:0000160
Lal16g0133 1207 SMART REC_2 1057 1199 IPR001789 GO:0000160
Lal16g0133 1207 Pfam Response regulator receiver domain 1059 1197 IPR001789 GO:0000160
Lal16g0133 1207 CDD REC_hyHK_CKI1_RcsC-like 1059 1199 - -
Lal16g0133 1207 ProSiteProfiles Histidine kinase domain profile. 504 760 IPR005467 -
Lal16g0133 1207 Gene3D - 565 760 IPR036890 -
Lal16g0133 1207 PANTHER OSMOSENSOR HISTIDINE KINASE 20 1012 - -
Lal16g0133 1207 PANTHER OSMOSENSOR HISTIDINE KINASE 1029 1204 - -
Lal16g0133 1207 Gene3D - 1036 1205 - -
Lal16g0133 1207 CDD HisKA 498 559 IPR003661 GO:0000155|GO:0007165
Lal16g0133 1207 Gene3D - 485 564 - -
Lal16g0133 1207 Pfam His Kinase A (phospho-acceptor) domain 498 563 IPR003661 GO:0000155|GO:0007165
Lal16g0133 1207 MobiDBLite consensus disorder prediction 1025 1044 - -
Lal16g0133 1207 PRINTS Bacterial sensor protein C-terminal signature 685 699 IPR004358 GO:0016310|GO:0016772
Lal16g0133 1207 PRINTS Bacterial sensor protein C-terminal signature 703 713 IPR004358 GO:0016310|GO:0016772
Lal16g0133 1207 PRINTS Bacterial sensor protein C-terminal signature 720 738 IPR004358 GO:0016310|GO:0016772
Lal16g0133 1207 PANTHER TWO-COMPONENT HISTIDINE KINASE 20 1012 - -
Lal16g0133 1207 PANTHER TWO-COMPONENT HISTIDINE KINASE 1029 1204 - -
Lal16g0133 1207 MobiDBLite consensus disorder prediction 970 1012 - -
Lal16g0133 1207 SMART HisKA_10 497 563 IPR003661 GO:0000155|GO:0007165
Lal16g0133 1207 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 552 756 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0133 Lal-Chr16 788001 794436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0133 21 1204 Histidine Kinase Gene Family AT2G17820 64.345 0.0 1537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g0133 HATPase_c 3e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0133 - - gmx:100814068 1927.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0133 16 788001 794436 Lal16g1826 16 17377992 17386250 PCT
Lal16g1826 16 17377992 17386250 Lal16g0133 16 788001 794436 PCT