Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0106 ATGGTGATTTCTAACGATAACATTTCTAACGCAATCAACCCCACAACTTCTTCTTTCCAAGATCCAATGGGCACCATAAAGATTGGGCAGAACAATAGAAGAGCCTTAGGTATTATCAATCAGAATATGGCAGTGGAAGGTCGATACCCGTGTGTCGTTAACAAGAGGGGTTTCTCAGAAAAATATGAGGTTTGTGAGAAGAAACAAGCAGATCCAGTTCATAGACCAATCACTAGGAGATTTGCTGCACAAGTTGCTAGCACAAAGCAAACTTGCGCCAAGTTTATCTTTATTGATGATGATGAATCCAAGTCAACAGAAGATCAGTCAGTGCCCATGTCTCTAGAGCAAACAGAAGTGTTGCATAACGAACCAGATCAGATGGAGGAAGTTGAGATGGAGGATATAGATGAAGAGCCTCTTTTGGACATTGATAGTAGTGATGCAAATAACCCTCTTGCAGTTGTGGACTATATTGAAGATCTTTATGCACACTACAGAAAATTTGAGGGTGCTAGTTGTGTCTCACCGAATTATATGGCCGAACAATTCGACATTAATGAAAAGATGAGAGCCATCCTGATTGACTGGCTTATTGAGGTGCACGACAAATTTGATCTCTTGCACGAGACATTATTTCTCACGGTTAATCTCATAGATAGATTTTTGGAAAAGCAGACAGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTCTGGTTGCTTTGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTTCCTGTGGTTGTAGATCTTATTCTCTTATCAGACAAAGCCTATTCCAGGAAGGAAGTTCTGGAAATGGAGAAGTTGATGGTGAACATATTGCAGTTTAACATGTCTGTGCCAACATCATATGTTTTTATAAAAAGGTTCCTGAAGGCAGCTCAAGCAGACAAAAAACTTGAGCTACTAGCTTTCTTCTTGGTTGAGCTATCTCTAGTTGAATATGAGATGTTGAAGTTCCCACCATCTTTGCTAGCTGCAGCTGCAGTCTACACTGCTCAATGCACTGTCTATGGTGTCAAACAGTGGAGTAAGACATGTGAATGGCATTCCAACTACTCAGAAGATCAGTTATTAGAATGCTCTAGTTCAATGGTTGATTTCCACAAGAAGGCTGGGACAGGGAAACTTACTGGGGTATATAGGAAATATTGCTCATCTAAGTTTATCTATGCTGCAAAATATGAACCAGCAAGTTTTCTTCTAGAAAACAACCCATTGTAG 1248 0.4014 MVISNDNISNAINPTTSSFQDPMGTIKIGQNNRRALGIINQNMAVEGRYPCVVNKRGFSEKYEVCEKKQADPVHRPITRRFAAQVASTKQTCAKFIFIDDDESKSTEDQSVPMSLEQTEVLHNEPDQMEEVEMEDIDEEPLLDIDSSDANNPLAVVDYIEDLYAHYRKFEGASCVSPNYMAEQFDINEKMRAILIDWLIEVHDKFDLLHETLFLTVNLIDRFLEKQTVVRKKLQLVGLVALLLACKYEEVSVPVVVDLILLSDKAYSRKEVLEMEKLMVNILQFNMSVPTSYVFIKRFLKAAQADKKLELLAFFLVELSLVEYEMLKFPPSLLAAAAVYTAQCTVYGVKQWSKTCEWHSNYSEDQLLECSSSMVDFHKKAGTGKLTGVYRKYCSSKFIYAAKYEPASFLLENNPL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0106 415 Pfam Cyclin, N-terminal domain 162 287 IPR006671 -
Lal16g0106 415 SUPERFAMILY Cyclin-like 288 406 IPR036915 -
Lal16g0106 415 Gene3D - 161 401 - -
Lal16g0106 415 Pfam Cyclin, C-terminal domain 289 403 IPR004367 -
Lal16g0106 415 PIRSF Cyclin_A_B_D_E 9 124 IPR039361 -
Lal16g0106 415 PIRSF Cyclin_A_B_D_E 63 414 IPR039361 -
Lal16g0106 415 PANTHER CYCLIN-B2-1 24 409 - -
Lal16g0106 415 SUPERFAMILY Cyclin-like 150 286 IPR036915 -
Lal16g0106 415 CDD CYCLIN 287 369 IPR013763 -
Lal16g0106 415 ProSitePatterns Cyclins signature. 191 222 IPR006671 -
Lal16g0106 415 Gene3D - 175 287 - -
Lal16g0106 415 PANTHER CYCLINS 24 409 IPR039361 -
Lal16g0106 415 SMART Cyclin_C_2 289 406 IPR004367 -
Lal16g0106 415 SMART cyclin_7 293 375 IPR013763 -
Lal16g0106 415 SMART cyclin_7 196 280 IPR013763 -
Lal16g0106 415 CDD CYCLIN 190 279 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0106 Lal-Chr16 621166 624863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0106 1 410 Core Cell Cycle Gene Families AT1G20610 57.639 1.48e-170 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0106 K21777 - gmx:100798068 617.076