Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0105 ATGGGAGGTGATGCTGCTGTTGACGCTACGGATTCCGCAGCCAACGGAGGAGCTGTTGGTATCAACATTCGATGCTCCAATGGTTCCAAATTTAAAGTTCAGATTAATCTCGATTCCACCGTTGGATCTTTCAAGGAAATCGTAGCTCGTAATTGTGATATCCCTGCTGATCAACAACGTCTGATTTACAAGGGTCGCATCCTCAAGGATGATCAAACCCTCAAAAGCTATGGTTTGGAGGTGGATCATACCATCCACTTGGTTCGTGGCTTTGCACCTGGCAATACAACTGGTGGGACCAATACTGGCAGTGCCAACACCGCAGTGAATAATACGAGTGGCACTGGTGCTAATGAGGGCGGCAGTTTAGGAGGGCCTGGTGTTGGAGCATCACTGTTCCCTGGGCTTGGTATCAATGGATTGGGGGGCAGTGGCTTATTTGGAGAGGGCTTTCCCGACCTTGAACAAATGCAGCAACCGTTTCTTTCAAATCCCAATATAGTGAGAGAAATAATGAACACTCCCGCTATGCAGAACTTAATAAATAATCCCGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCGTGGATCGAAACCCTGAACTAGCCCACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACTAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGATAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGCGGCGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACCACAATGGGTGGTAATACAGGAAGTGGTAATGCATCGATCTTGGGAACACAAGGTGGCCAAGTCAGGAACTTATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCCAATCCTTGGTCCTCAACTGGAACTGGAGTTGCCCAAAACAATACCAGAAGGCCAACTACCGGTGGGGATGCTCGACAACAGACACCTACAGGTTTAGGAGGGCTTGGTCTACCAGATCTTGAAGGCATGTTGGGCGGTATGCCAGATGCTGCTTTGATGACACAGTTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGTCAATGCTGGCCAGCGTGGCATGCCTGATATGAATTCCCTTAGAGAAGTCATGCAGAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTGATGTCTTTCCAGCAATCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACCCGGGAACCTGGTCAAACTGGTGCTGGCACTGGACCATTGAACAACACGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCCGGCAGCTTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATTAGGGCTCTTATTGCTACCTCAGGGAATGTTCATGCAGCTGTTGAGCGGCTTCTGGGGAACTCTGGTGGAGGACAGTAG 1623 0.472 MGGDAAVDATDSAANGGAVGINIRCSNGSKFKVQINLDSTVGSFKEIVARNCDIPADQQRLIYKGRILKDDQTLKSYGLEVDHTIHLVRGFAPGNTTGGTNTGSANTAVNNTSGTGANEGGSLGGPGVGASLFPGLGINGLGGSGLFGEGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELVDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNTGSGNASILGTQGGQVRNLSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGVAQNNTRRPTTGGDARQQTPTGLGGLGLPDLEGMLGGMPDAALMTQLMQNPAISQMMQSMLSNPQTMNQILGVNAGQRGMPDMNSLREVMQNPEFLRLFSSPETLQQLMSFQQSLLSQLGQQQSTREPGQTGAGTGPLNNTGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGGGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0105 540 Gene3D - 189 247 - -
Lal16g0105 540 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Lal16g0105 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 10 537 - -
Lal16g0105 540 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Lal16g0105 540 Pfam UBA/TS-N domain 496 532 IPR015940 -
Lal16g0105 540 MobiDBLite consensus disorder prediction 276 350 - -
Lal16g0105 540 CDD Ubl_Dsk2p_like 19 91 - -
Lal16g0105 540 PANTHER UBIQUILIN 10 537 - -
Lal16g0105 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Lal16g0105 540 Gene3D - 17 100 - -
Lal16g0105 540 CDD UBA_PLICs 496 534 - -
Lal16g0105 540 SMART CBM 144 181 IPR006636 -
Lal16g0105 540 SMART CBM 194 233 IPR006636 -
Lal16g0105 540 SMART CBM 397 432 IPR006636 -
Lal16g0105 540 SMART CBM 352 394 IPR006636 -
Lal16g0105 540 MobiDBLite consensus disorder prediction 276 342 - -
Lal16g0105 540 SMART ubq_7 19 90 IPR000626 GO:0005515
Lal16g0105 540 SMART uba_6 496 534 IPR015940 -
Lal16g0105 540 MobiDBLite consensus disorder prediction 442 465 - -
Lal16g0105 540 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Lal16g0105 540 SUPERFAMILY Ubiquitin-like 12 102 IPR029071 -
Lal16g0105 540 Gene3D - 478 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0105 Lal-Chr16 610975 616352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0105 21 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.353 3.15e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0105 K04523 - gmx:100797539 822.387