Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0102 ATGAAGTTATGTACTAGTTGGTTGTTGATTTCCACGCTCTCCCTCTGTCTTCTTGCTTCTGCTACTGTCCCCCCAAACGAAGCTTGGGGGCTTACAAGTTTGAGAGAAGCTATCTATGAAGACCCATACCTTGTTTTATCGAATTGGAACACTTTGGATTCAGATCCTTGTGACTGGTTTGGTGTCTCTTGCACTATGGCTGGTGACCATGTCCTCAAGCTAAACATCTCAGGGTCATCTTTAAGAGGATTTCTTGTACCAGAATTGGGGCAAATCACCTACTTGCAAGAATTAATTTTACACGGTAACAATCTCATTGGCACAATACCTAAAGAGTTGGGCGTGCTGAAATCTCTCAAGGTGTTGGACTTGGGAAAGAATCGGTTATCAGGACCAATTCCTCCAGAGATTGGAAATTTAACCCTACTTGTGAACATAAACTTGCAGTCCAACGGGTTGACTGGTAGGGTACCTGCAGAGCTTGGAAATTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAGGCTCCAAGGATCTGTTCCTGCGAGTAGCAGTTCAAATTTTGATTCAAATATGCATGAGATGTATGCCTCAAAAGCGAACTTGACTGGTTTCTGTCGTTCGTCTCAGTTAAAAGTTGCAGACTTTTCATATAACTTTTTAGTTGGCGACATTCCCAAATGCTTGGAGTATCTTCCAAGGTCAAGCTTTCAAGGGAACTGCCTCCAGAGCAAGGAGTTGAAGCAGCGCCCTTCTATACAATGTGCGAACTGTTATTTCATAGCTGGTGCTTCACCTGCCAAGAGCCAGCCAGTGGTCAACCCAAACCACCAACCTGCTCAATATGTGTCAAAGCATCACGTAACATCAAAACCAGTATGGCTTTTGACTCTAGAAATAGTATCAGGAGCCATGGTTGGTTCTCTCTTTCTAGTTGCAGTTCTCACTGCTTGTCAGAAGTGTAACAAACAAGCATCAATCATTATTCCTTGGAAAAAGTCTCCAAGCCAGAAAGGCCATACTGCAGTTTATATAGACCCTGAGATGTTGAAGGATGTGAGAAGTTATAGCAGACAAGAGCTTGAAGTGGCATGTGAAGATTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTTGTTTACAAGGGAAACATGAAAGGTGGGCCTGAGATTGCTGTCATTTCTGTCAGCATCAAGGAGGCGCTTTGGACAGGATATCTTGAACTTTATTTTCAGAGAGAGGTAGCAGACTTGGCAAGGCTAAATCATGAAAATACAGGAAAACTATTGGGCTATTGTAGAGAGAGCACTCCGTTCACAAGGATGTTGGTGTTTGAGTATGCTTCAAATGGGACACTTTATGACCACCTACATTGTTATGAAGAAGGATGTCAGTTCTCTTGGATAAGGCGTATGAAAATTGTTATAGGCATTGCACGTGGACTCAGGTATTTGCACACAGAAATTGAGCCCCCATTCACTATTTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGTCTATCCTAGAAAGATCAGAAAAGAATTCTGGTTCTATTGGCAGTCAAGGTGCTGTCTGTGTTCTTCCAAATTCCATTGAGGCACGGCATCTTGATACCAAAGGGAACATATATGCTTTTGGGGTGCTTCTGCTGGAGATAATCAGTGGCAGACCTCCATACTGTAAGGAGAAAGGGTACTTGGTGGATTGGGCCAGAGAATATCTTGAAATGCCAGAAGTGATGTCTTATGTGGTAGATCCTGAATTGAAACATTTTAGATATGATGACCTCAAAGTGATATGTGAGGTAATAACTCTTTGTATCAACCCTGATACCACTGCACGCCCATCTACGCGTGAATTATGCAGCATGCTGGAGTGCAGAATTGACACTTCTATAAGCATGGAGCTCAACTCATCATCTTTAGCTTGGGCTGAACTTGCACTTTTGTCATAA 2001 0.4258 MKLCTSWLLISTLSLCLLASATVPPNEAWGLTSLREAIYEDPYLVLSNWNTLDSDPCDWFGVSCTMAGDHVLKLNISGSSLRGFLVPELGQITYLQELILHGNNLIGTIPKELGVLKSLKVLDLGKNRLSGPIPPEIGNLTLLVNINLQSNGLTGRVPAELGNLRYLQELRLDRNRLQGSVPASSSSNFDSNMHEMYASKANLTGFCRSSQLKVADFSYNFLVGDIPKCLEYLPRSSFQGNCLQSKELKQRPSIQCANCYFIAGASPAKSQPVVNPNHQPAQYVSKHHVTSKPVWLLTLEIVSGAMVGSLFLVAVLTACQKCNKQASIIIPWKKSPSQKGHTAVYIDPEMLKDVRSYSRQELEVACEDFSNIIGSSPDSVVYKGNMKGGPEIAVISVSIKEALWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVFEYASNGTLYDHLHCYEEGCQFSWIRRMKIVIGIARGLRYLHTEIEPPFTISELNSSAVYLTEEFSPKLVDFESWKSILERSEKNSGSIGSQGAVCVLPNSIEARHLDTKGNIYAFGVLLLEIISGRPPYCKEKGYLVDWAREYLEMPEVMSYVVDPELKHFRYDDLKVICEVITLCINPDTTARPSTRELCSMLECRIDTSISMELNSSSLAWAELALLS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0102 666 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 664 - -
Lal16g0102 666 Gene3D Phosphorylase Kinase; domain 1 343 448 - -
Lal16g0102 666 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Lal16g0102 666 SUPERFAMILY Protein kinase-like (PK-like) 346 641 IPR011009 -
Lal16g0102 666 Gene3D Transferase(Phosphotransferase) domain 1 449 655 - -
Lal16g0102 666 SUPERFAMILY L domain-like 33 234 - -
Lal16g0102 666 PANTHER PROTEIN MALE DISCOVERER 2 8 664 - -
Lal16g0102 666 Gene3D Ribonuclease Inhibitor 30 138 IPR032675 -
Lal16g0102 666 ProSiteProfiles Protein kinase domain profile. 367 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0102 666 Pfam Protein tyrosine and serine/threonine kinase 370 639 IPR001245 GO:0004672|GO:0006468
Lal16g0102 666 Gene3D Ribonuclease Inhibitor 139 266 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0102 Lal-Chr16 587387 591924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0102 40 645 Receptor kinase-like Gene Family AT5G45780 28.065 3.88e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lal16g0102 PK_Tyr_Ser-Thr 1.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0102 - - gmx:100794714 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0102 16 587387 591924 Lal16g0102 16 587387 591924 ECH
Lal16g0102 16 587387 591924 Lal23g1521 23 15376845 15382747 LSH
Lal16g0102 16 587387 591924 Lal16g1223 16 8507910 8512339 PCT