Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0099 ATGGATGTGAGGGAAGCTATGGCATTCTCAGGTAGTTCTGGTTCATATTCCGTACATAGAGAAGGAGGGTTTGTTGGTTCTGGAACACAGACCAGAGGGTTCCAACCAGTTTCTGGTTTCAGAAGTTTGTTGAATGTGAGAGATGGTTCTTCTGGTTCTGCATTTTCAGTAGAGCCTCCTGAGCATGACAAATTTAGTCATGACATTAGCATTGTTACCCTTCCTGGAATGGTACCTTCTTCCTCAGGGGAGACTGTTAAGAAGAAAAGAGGGAGGCCAAGAAAATATGGTCCTTCTGATGCTCCAGTTTCGTTGAGACTCTCTCCCATGTCTGCCACTGCTAATTCAACCCCTGGTTCCGAGAAACGGCCTCGAGGGCGCCCCCGGGGAAGTGGAAGGAAGCAACAGTTAGCTTCTCTAGGAGAATGGATGAACAATTCTGCAGGACAAGCTTTTTCGCCTCATGTTATCACCATTGGAGTTGGGGAGGACATCGTAGCAAAGTTATTGTTGTTTGCACAGCAGAGATCAAGGGCTCTATGCATCTTATCAGGCACTGGGACAATTTCTTCAGTCACTATGTGTCAGCCTGGTTCTATTGCTGGCAGTGTCACTTATGAGGGGAGATTTCAAATATTATGCTTGTCTGGATCTTACTTGGTTGCCGAAGATGGTGGACCTCGAAATAGAACAGGTGGCATGAGTGCTTCCCTTTCTAGTCATGATGGTCATATTATTGGTGGTGGTATTGCTAATCTTATTGCTGCAAGCCCAGTGCAGCTTATGCAAATGGCCTCTAAGTTATACCACTGGAAGGTGGTAGTGTGCAGTTTTATATATGGCAGCTCGAAGCCAAAAACTAAGGAAGCAGCAATTAGTGATAAGTTAGCTTCTCCGACCGTGAGTGCTCCGGTTACTCAAAACTACAGTGCTTCAGCAACAGGCAAGTGGGCAATAGATGCAGATGCAGATGTGGAAAGCGATCAGCCACAAGCACACACTGGCATTGACTTGACTCGTGGGTGA 1026 0.4639 MDVREAMAFSGSSGSYSVHREGGFVGSGTQTRGFQPVSGFRSLLNVRDGSSGSAFSVEPPEHDKFSHDISIVTLPGMVPSSSGETVKKKRGRPRKYGPSDAPVSLRLSPMSATANSTPGSEKRPRGRPRGSGRKQQLASLGEWMNNSAGQAFSPHVITIGVGEDIVAKLLLFAQQRSRALCILSGTGTISSVTMCQPGSIAGSVTYEGRFQILCLSGSYLVAEDGGPRNRTGGMSASLSSHDGHIIGGGIANLIAASPVQLMQMASKLYHWKVVVCSFIYGSSKPKTKEAAISDKLASPTVSAPVTQNYSASATGKWAIDADADVESDQPQAHTGIDLTRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0099 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 262 IPR005175 -
Lal16g0099 341 MobiDBLite consensus disorder prediction 322 341 - -
Lal16g0099 341 ProSiteProfiles PPC domain profile profile. 149 300 IPR005175 -
Lal16g0099 341 MobiDBLite consensus disorder prediction 106 120 - -
Lal16g0099 341 Gene3D - 154 270 - -
Lal16g0099 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 341 IPR039605 GO:0003680
Lal16g0099 341 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 341 - -
Lal16g0099 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 262 - -
Lal16g0099 341 MobiDBLite consensus disorder prediction 74 136 - -
Lal16g0099 341 CDD DUF296 154 262 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0099 Lal-Chr16 572389 576387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0099 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 42.748 1.23e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0099 - - gmx:100790569 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0099 16 572389 576387 Lal16g0099 16 572389 576387 ECH
Lal16g0099 16 572389 576387 Lal16g1216 16 8472536 8476545 PCT
Lal16g0099 16 572389 576387 Lal15g1384 15 16004159 16007742 PCT