Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0091 ATGATACCTCTCTTTCTTGCCTTATTAAAAGAACAAGCCTCAGAAGAAGAAAAAACCATCTCTTACTCATTCTTCCATCATCCTCTTCTACTGCTTCTGTTCCTCTACTTTGATATCCATTTCCTGTTCCTACTCTCCCATCATGGTATCTATGTTTCACCTTCAAACATAAGAAAAAGCAGAAGTAAAGTCGAAAGGAAAACAAATTTGATGGCTAGACAAGTGTGTGAAGGGAAATTAAGGGACATGGTGTCTTCATCTTCAGCTGGATTCTCATACAGTGATCATGTGTCACCAACCCATCATTTAGCGAACCAGATCCAAGGCTTTGTGTCTGACTCAGACATATTCAACCTCACCACAAATATGGAGATGATAGGGTTTCACAAGAATCAGCTTCATCAGCAGCAGCAACAGCAGTGTGACAGCACCAACATGTGGGAAAGTAACAATTTCTTCTCCAAACTTGGTCCATCTACTTCTACCAATACCATGAATGAGTCTTCTACCACTTTCTATGAATACAGCAATAACAACAACAATAGTAATAAACCAGATTTCATATCAGGGATTTCTGAAACAACAAGCAATGATAATCTAATTATTGGAACAACTACTCATGAGGACTCAGCTCCATGGCAAGACAATAGGTTATTGGTTGATGATTCTTCTTTTAGGTCTGTGTTCCCTTGTGAAGGAAATGAAAGGCCAAGTCAAGGACTTTCACTCTCTCTTAGTTCAACCAACCCTTCAAGTATTAGCCTACAATCTTTTGAGCTAAGACATACAGCTCAACATCATCATCGGAACCAACCTGATTTGGGGTTCTTTGTAAAATCACAAAATGTTCAACAGCACCACCAACAACAGATTTTGCAAGATGGATACTTGAGTGCTAAAGCTGCAAGTGTTTATCAAGGACATTATTTTATCAAGAATTCAAAGTACTTGGTACCTGCACAGGAGCTTCTGAACGAGTTTTGTAATTTGGGAACAAAGCAAAGTGACATGGTGATAAAGCATAAGTTAAACAGGAACAAGCAACGGGAAGAGGATAACAACATCGGTATTGGTTCCTCAAAGAAACCTACTCTTACCTCTTTGGAATTTGTAGAGTTGCAGAAGAGAAAGACAAAGCTTCTTTTGATGCTGGAAGAGGTTGGCAGAAGATACAAGCACTACCGTAATCAGATGAAGGCAGTGGTATCATCATTTGAAGAAGTGGCCGGGGATGGGGCAGCCACAGTGTACTCAGCTTTGGCTTTAAAAGCCATGTCAAGACATTTCAAGTGTTTGAAGGATGAGATTTTGGGGCAGATACAAGCCACAGGGAAAAGCATGGGAGAGAAAGATTCAGTAGCAGCAGGAGCAACAAGGGGTGAAACACCAAGGCTCAAAGTTATTGACCAAACACTAAGACAACAAAAAACATTTCAGCAAATGACCATAATGGAAACACATCCATGGAGACCCCAACGTGGCCTTCCTGAACGATCCGTTTCAGTTCTAAGGGCTTGGCTTTTTGACCATTTTCTCCATCCGTACCCAAGCGATATTGATAAACATATTTTAGCCCGCCAAACTGGTCTCTCTAGAAGCCAGGTATCAAATTGGTTCATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAGGAAATGTACATAGAAGAAGTAAAGGAGCATGAAAACGACATGACTAATTCCTTAGAGGGTGGTACTCATCCTGATACTGAAGATAATGTTCAAAACCAATTACATCCTTCATCAATAATCGAGGAACAAAAGCCAATACTTAGAATTGACACAGAATGTGCCTCGTCTATCATCAATAACCATAACACAAATAATAACAAAAACGACCCAACAAAGAACATGACTAGATCCCTTTACAACCAGCACCATATGAATCCCCAGGACCATCTTAGAATATTTAGCCCTAACTCCATCGACACATTTGGGTCGATGGAGCTTGATTTTTCATCCTACAACCATCACCACTCTTCTAGCATGGTTCCTTACACAGCAAGTAACAATCAAAATGCCAACCTTGGTTTCAACAATGATGGTAGTAGTGGAGTGTCTTTGACTCTAGGGTTACAACAGCATGGTGAAAGCGGTGTGAGTCTAGCATTCCCTTCAACAACACATCAGAGTTCATTGTTCTACACAAGGGACCCCAATGAAGATTGTCAAACAGTGGAGTACTCTTTTCTTGATTGTCAAGGACAAAATTTGCAATACAGAAATTTGATGGGGGCACAGTTGCTACATGACTTGGCAGGATAG 2289 0.4059 MIPLFLALLKEQASEEEKTISYSFFHHPLLLLLFLYFDIHFLFLLSHHGIYVSPSNIRKSRSKVERKTNLMARQVCEGKLRDMVSSSSAGFSYSDHVSPTHHLANQIQGFVSDSDIFNLTTNMEMIGFHKNQLHQQQQQQCDSTNMWESNNFFSKLGPSTSTNTMNESSTTFYEYSNNNNNSNKPDFISGISETTSNDNLIIGTTTHEDSAPWQDNRLLVDDSSFRSVFPCEGNERPSQGLSLSLSSTNPSSISLQSFELRHTAQHHHRNQPDLGFFVKSQNVQQHHQQQILQDGYLSAKAASVYQGHYFIKNSKYLVPAQELLNEFCNLGTKQSDMVIKHKLNRNKQREEDNNIGIGSSKKPTLTSLEFVELQKRKTKLLLMLEEVGRRYKHYRNQMKAVVSSFEEVAGDGAATVYSALALKAMSRHFKCLKDEILGQIQATGKSMGEKDSVAAGATRGETPRLKVIDQTLRQQKTFQQMTIMETHPWRPQRGLPERSVSVLRAWLFDHFLHPYPSDIDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYIEEVKEHENDMTNSLEGGTHPDTEDNVQNQLHPSSIIEEQKPILRIDTECASSIINNHNTNNNKNDPTKNMTRSLYNQHHMNPQDHLRIFSPNSIDTFGSMELDFSSYNHHHSSSMVPYTASNNQNANLGFNNDGSSGVSLTLGLQQHGESGVSLAFPSTTHQSSLFYTRDPNEDCQTVEYSFLDCQGQNLQYRNLMGAQLLHDLAG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0091 762 Pfam Associated with HOX 311 436 IPR006563 -
Lal16g0091 762 SMART prehox3 305 438 IPR006563 -
Lal16g0091 762 Gene3D - 492 554 - -
Lal16g0091 762 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 717 - -
Lal16g0091 762 SUPERFAMILY Homeodomain-like 490 555 IPR009057 -
Lal16g0091 762 CDD homeodomain 489 550 IPR001356 GO:0003677
Lal16g0091 762 SMART HOX_1 489 553 IPR001356 GO:0003677
Lal16g0091 762 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 71 717 - -
Lal16g0091 762 Pfam Homeobox KN domain 506 545 IPR008422 GO:0003677|GO:0006355
Lal16g0091 762 ProSiteProfiles 'Homeobox' domain profile. 486 549 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0091 Lal-Chr16 531005 536325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0091 216 761 Homeobox Transcription Factor Family AT5G41410 44.746 3.63e-133 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal16g0091 POX 1.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0091 - - lang:109331282 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0091 16 531005 536325 Lal16g0091 16 531005 536325 ECH
Lal16g0091 16 531005 536325 Lal23g1534 23 15485835 15492121 LSH
Lal16g0091 16 531005 536325 Lal16g1200 16 8261263 8264443 PCT
Lal16g0091 16 531005 536325 Lal15g1411 15 16254899 16259853 PCT
Lal7g0913 7 15606311 15609669 Lal16g0091 16 531005 536325 PCT