Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0082 ATGGAAAAACACACTCGCCATGTTACACACACGAAACTTGTGAGAGAAGAAGACTTAGTTATGAAACGTTCATACCCGAAGGTTGTGAGAATAACCGTCACAGACACCGATGCCACTGACTCCTCCAGCGACGAAGAACAACATGAATGCTCCACGCGCCACTGCCGTCCCACAAAGTTCGTCAACGAGATTTATTTTAAGTCGCTTGAGAAAAACGGCGTCGTTTCACGGAAGAGAAACAGGGCCAAGTCTAAGTCTATTGCTGTTGGAAAAACAAGAGTTTCAGTGAGTCGTTTACCGGAAAAGGTTAACTCCGGCAAGAAATTCCGTGGAGTGAGACAGAGACCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCAGTTCGACGAGTGAGGTTGTGGTTGGGAACCTATAACACTGCTGAGGAAGCTGCAATGGTGTACGACAACGCAGCCATTAAGCTACGTGGACCACACGCGCTCACCAATTTCATAACTCCACCAACTCAGGAGAAAACACCATTGACCATTAGCCACGGTTATATGTCAGGAGAAGAATCTCAAAACAAGACCAGTTTGTGTTCTCCCACTTCTGTTCTTCAGTGTTACTCCTTACACGAAGAATCTGACTCTTTAACGGCCAAGGATGATGCGTGTGAATATTTGTATGCTTCGAAGAATTTGTTGGAAACGGTTAAACACAAAGGTGAGTCAGTGGAGGAAGTGTTTCGAAGTCCAAACGACACGGTATTTGATATTCAAGGTTCCTCGCCGACACATAAAAGCATGTTTGAGAAAAATGATAACGTTCAAGAAAGTATGTTCTTCAATGATGATTGGGGGAGTGATATGTTTCTCACTTCTTGTGAGGATTTGGATTTGGATTTGGATTTGGGTTTCAAGGATTGGCATGATATGGTTAATGATTGGGACACTGATATGTTTCTTGTTTCTTCTAGTGATTTGGATTTGGGTTTCAAGGATTGCCAATATAAGAATGATCCACTTGTTGCTGTTTGA 1020 0.4373 MEKHTRHVTHTKLVREEDLVMKRSYPKVVRITVTDTDATDSSSDEEQHECSTRHCRPTKFVNEIYFKSLEKNGVVSRKRNRAKSKSIAVGKTRVSVSRLPEKVNSGKKFRGVRQRPWGKWAAEIRDPVRRVRLWLGTYNTAEEAAMVYDNAAIKLRGPHALTNFITPPTQEKTPLTISHGYMSGEESQNKTSLCSPTSVLQCYSLHEESDSLTAKDDACEYLYASKNLLETVKHKGESVEEVFRSPNDTVFDIQGSSPTHKSMFEKNDNVQESMFFNDDWGSDMFLTSCEDLDLDLDLGFKDWHDMVNDWDTDMFLVSSSDLDLGFKDCQYKNDPLVAV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0082 339 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Lal16g0082 339 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Lal16g0082 339 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Lal16g0082 339 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Lal16g0082 339 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Lal16g0082 339 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Lal16g0082 339 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Lal16g0082 339 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 312 - -
Lal16g0082 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 3 312 - -
Lal16g0082 339 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0082 Lal-Chr16 494329 495387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0082 3 212 AP2-EREBP Transcription Factor Family AT4G27950 47.297 1.76e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0082 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0082 - - lang:109350372 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0082 16 494329 495387 Lal16g0082 16 494329 495387 ECH
Lal16g0082 16 494329 495387 Lal23g1549 23 15585090 15586043 LSH
Lal16g0082 16 494329 495387 Lal16g1169 16 7995525 7996514 PCT