Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0077 ATGCAAGAAAAAAACATACAGTTTGATCTCCAAAATGGAGCTGATATTGGCTCCTCTTTATCAAAGCTCATATTATCAAGTGGAACAAATACTTTTGACTCAATTTTCTCTCATTGCCCACCAACAAATTCAAATTCGACTCCAACTTCCAGCACTAGCACAAGTCCTAGTACCAATTCTTTGTTGGAGTGCTTTGAACCTTTAGGCACTTCTACCTTTGAGTCTCTAGGTTCTTCAGTCTATCTTCGCCAAAGAGATATCTTGCAAAAGTTTTACCGCGAAAGCAGGGTCAATGGATCTTTTGTCCCAACTTTTCCAATGGCAAATTCATCCATAAGTTCTGTTGCATGCACAAATTCTTTGACTTATTTGGTGAACCACCCTTGCAAGAAGAAGCAATACAGGGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTTGCAGAGATTAGACTCCCTCAGAACAGGATGAGAGTGTGGCTTGGAACTTATGAAACTGCTGAAGCTGCTGCCTATGCTTATGATTGTGCCGCTTATAAGCTCCGTGGAGAATATGCACGTTTGAATTTCCCAAATCTTAAGGATCCTACAAAGTTAGGATTTGGAGATTCAACCAGATTGAATGCTTTGAAGATCTCTGTGGATGCTAAAATTCAAGATATTTGTCAAAAGGTGAAAAGGGAGAAAGCTAAAAAGAGTGTTGCAAAGAAGCTTAAATCAGTTAATGCCTCAAACCGTGAAAAATCCTCGGACATGAATGCCAATTCGTGTTCTAGTTCTTCATCCTTGTCACAGACTAGTTTTTATGATAATTGGGAAAATGAGTTGCTATTGCCTAGTGTTTCAGAGGATGAAATTTGGAAGGATGAGAACTCGGCAGAATTTCCGATGATGGTAACAGAGGAACCAGAATTTGAAGGAGGTTCACTGGCAAGGATGCCATCCTTTGATCCTGAGTTAATTTGGGAACTTCTGGCAAATTAG 981 0.4037 MQEKNIQFDLQNGADIGSSLSKLILSSGTNTFDSIFSHCPPTNSNSTPTSSTSTSPSTNSLLECFEPLGTSTFESLGSSVYLRQRDILQKFYRESRVNGSFVPTFPMANSSISSVACTNSLTYLVNHPCKKKQYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDCAAYKLRGEYARLNFPNLKDPTKLGFGDSTRLNALKISVDAKIQDICQKVKREKAKKSVAKKLKSVNASNREKSSDMNANSCSSSSSLSQTSFYDNWENELLLPSVSEDEIWKDENSAEFPMMVTEEPEFEGGSLARMPSFDPELIWELLAN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0077 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 326 - -
Lal16g0077 326 MobiDBLite consensus disorder prediction 244 262 - -
Lal16g0077 326 MobiDBLite consensus disorder prediction 39 58 - -
Lal16g0077 326 MobiDBLite consensus disorder prediction 235 262 - -
Lal16g0077 326 Pfam AP2 domain 133 183 IPR001471 GO:0003700|GO:0006355
Lal16g0077 326 SUPERFAMILY DNA-binding domain 133 190 IPR016177 GO:0003677
Lal16g0077 326 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Lal16g0077 326 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Lal16g0077 326 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Lal16g0077 326 Gene3D AP2/ERF domain 132 191 IPR036955 GO:0003700|GO:0006355
Lal16g0077 326 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Lal16g0077 326 CDD AP2 132 192 IPR001471 GO:0003700|GO:0006355
Lal16g0077 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0077 Lal-Chr16 468760 469740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0077 14 326 AP2-EREBP Transcription Factor Family AT1G64380 46.269 3.66e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0077 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0077 - - lang:109331119 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0077 16 468760 469740 Lal16g0077 16 468760 469740 ECH
Lal16g0077 16 468760 469740 Lal23g1553 23 15612351 15613289 LSH