Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0073 ATGGTTTCTTTATCCCTCTTGTGTTTATTTCTCGTCATTCTTTTCCATCTTCACACCATCACAAGAGGAGATATTTTTGAAATCATGTCATGTGGTGAAATTGATATTCAATTTCCTTTCTGTTTAAAAGGGGCCAATTACAAAGGTGGTGGTTGTAACTATCCACACCCCAATTTCCAACTTTCATGCGACAACCATAGTCGTACTATTCTAACACTCCCACATTCTGGGGATTTGTTAGTTAAAAGGATCAATTACGAGGAACAAATTATTCAAGTCAACGACCCAAATGTGTGTCTTCCTAAAAGTTTCTTACAAAACTTGACACTTTCCATCTCCCATCCTTTCATTTTTTATGTCACTTTTTATGATTTATACAACCTTGTTTTTGTCAAGTGCCCTTCAAATCTAACTGACTCAATTTCATTACCTTCAATCTCTTGTCTCCAAGAAACAAACTCTTCTTCTTCAACATCATCATATTTTTCATTTTTTGGATATTATGTGAATGTGTCAGAATCGCCATCACTATTCTATGGGTGTGAGGTGGTTTCTTCTAGTGTTGTTGTCCCCTTTCCAAATATGAATAGTGATATTGAGTTGATATGGGAAAGACCCATTTCTGGGGATTGTGATGATCGTTCTCAATTTTGTGGCTTCGTTGTTGGTTCAAGTTTACAAGTTGGATGCATCTCTGACCCTAACCATACAACAGGTGTTTCAAGAAGTCTCAAATATGGTTTAAGTATTGGAGTGGGAATACTTGCACTCCTATGTCTGATCGAGCTTTCTTGCTTTATTTGCATGAAGTTCAACACAGAGCTTCCTAGTAGTATCTCTATTTTCACTCTTCAACTGCAACCTCGCAATTTAAGTCAGCTCTTACTGAAGCCCAATGATAATATGTGTCCAATATGCCTATCTGAATATGAGCCCAAGGAGATATTAAGGATCATACCTGAGTGCAACCATTATTTCCATGCACTCTGTATAGATGAGTGGCTTAAGATGAATGTTACATGCCCTTTATGTAGGAATGCACCATATGCAACATACTCTGATGTTGCCTCTTCTTATTCTTCACGTACCATAGATAATCCAATTCCCAATCACACACTTGATATAGCGTAG 1131 0.3722 MVSLSLLCLFLVILFHLHTITRGDIFEIMSCGEIDIQFPFCLKGANYKGGGCNYPHPNFQLSCDNHSRTILTLPHSGDLLVKRINYEEQIIQVNDPNVCLPKSFLQNLTLSISHPFIFYVTFYDLYNLVFVKCPSNLTDSISLPSISCLQETNSSSSTSSYFSFFGYYVNVSESPSLFYGCEVVSSSVVVPFPNMNSDIELIWERPISGDCDDRSQFCGFVVGSSLQVGCISDPNHTTGVSRSLKYGLSIGVGILALLCLIELSCFICMKFNTELPSSISIFTLQLQPRNLSQLLLKPNDNMCPICLSEYEPKEILRIIPECNHYFHALCIDEWLKMNVTCPLCRNAPYATYSDVASSYSSRTIDNPIPNHTLDIA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0073 376 ProSiteProfiles Zinc finger RING-type profile. 303 345 IPR001841 -
Lal16g0073 376 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247
Lal16g0073 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 360 - -
Lal16g0073 376 SUPERFAMILY RING/U-box 295 349 - -
Lal16g0073 376 SMART ring_2 303 344 IPR001841 -
Lal16g0073 376 CDD RING-H2_PA-TM-RING 303 345 - -
Lal16g0073 376 Pfam Ring finger domain 301 345 IPR001841 -
Lal16g0073 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 350 IPR013083 -
Lal16g0073 376 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0073 Lal-Chr16 437871 439252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0073 30 348 C3H Transcription Factor Family AT2G46495 33.929 4.46e-39 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0073 16 437871 439252 Lal16g0073 16 437871 439252 ECH