Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0066 ATGAGTAGTTGGAGTAGTACTTGTTCATCGCTCCATCAAGTTACAAACACGAAGAAGAAGTTGAAGGGTGTTCGACGTAGAAAATGGGGTAAGTGGGTATCTGAGATTCGTGTTCCAGGAACACGACAACGTTTGTGGTTAGGGACTTATGCTACGGCGGAGGCTGCGGCGGTAGCACATGACGTGGCAGTGTATTGTCTACGAAAGCCTTCTTCTTTATCATTGGAAAAACTCAACTTTCCTCAGACCTTGTCTTCTTATGATGTCCAAAATAGAAATGACATGTCACCTAAGTCAATTCAGAAGGTTGCTTCTGATATTGGAATGGATGTTGATGCTAGAAATATTGCAGGAAACACAACTACGGTAGTTGTAGAACAAACTAAACATGAGAGGAAAAATGTTGATGATTGTGATTTATTTTGGTGGGAAATTTTGGGTGATGATTCTCAAGAAAGTGAAGAAGATGGTTGTAGAGAAGGGGGGGGCTTGAGCATTTCAATAGAAGATTATCTTTAA 519 0.4066 MSSWSSTCSSLHQVTNTKKKLKGVRRRKWGKWVSEIRVPGTRQRLWLGTYATAEAAAVAHDVAVYCLRKPSSLSLEKLNFPQTLSSYDVQNRNDMSPKSIQKVASDIGMDVDARNIAGNTTTVVVEQTKHERKNVDDCDLFWWEILGDDSQESEEDGCREGGGLSISIEDYL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0066 172 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Lal16g0066 172 Gene3D AP2/ERF domain 19 83 IPR036955 GO:0003700|GO:0006355
Lal16g0066 172 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lal16g0066 172 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lal16g0066 172 ProSiteProfiles AP2/ERF domain profile. 20 81 IPR001471 GO:0003700|GO:0006355
Lal16g0066 172 CDD AP2 19 50 IPR001471 GO:0003700|GO:0006355
Lal16g0066 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 12 133 - -
Lal16g0066 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 133 - -
Lal16g0066 172 SUPERFAMILY DNA-binding domain 20 81 IPR016177 GO:0003677
Lal16g0066 172 SMART rav1_2 20 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0066 Lal-Chr16 396090 396608 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0066 18 113 AP2-EREBP Transcription Factor Family AT1G71520 68.750 1.43e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0066 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0066 - - aprc:113869965 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0066 16 396090 396608 Lal23g1570 23 15706196 15706696 LSH