Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0061 ATGGACATAGGTTCCAATTCAACCCAAACCGGTGCTGCTACTTCTGCATACAGAGGTGTACGCAAAAGAAAATGGGGGAAATGGGTCTCTGAAATTCGTGAACCTGGCACCAAAACCAGAATCTGGTTAGGTAGCTTCCAGACTCAGGAGATGGCTGCAGCTGCATACGACATGGCAGCATTGCATTTCCGGGGCAAAGAAGCGAGGCTCAACTTCCCTGAACTTGCAGCCGCGCTTCCTCGCCCCGTGAGTAACAATGCTGACCACATTCGCATGGCTGCACACGAGGCGGCCCTAAGGTTCAGGACTAATTCACACCTGATCACAGAGCCTGGTGGTGATGGTGGTGGTGGTGGTGATAACGGTGGTTCTTCATCTAATTCAGCTGGGAGAGTAAGACTCTCCCCTAGTCAGATTCAGGCCATCAATGACTCGCCTCTGGACTCACCCAATATGTGGTTGCAAACACCAGATACTTTCATGTTGGATGATGAGTCTATGATGTTTGCTAATAATGATTATGACTATAAGCTCTTTGATGAGGAGGAGAATGAGTGGGAGAATATGCACACTACTTCTCTATGGGATCCTTAG 594 0.4882 MDIGSNSTQTGAATSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFQTQEMAAAAYDMAALHFRGKEARLNFPELAAALPRPVSNNADHIRMAAHEAALRFRTNSHLITEPGGDGGGGGDNGGSSSNSAGRVRLSPSQIQAINDSPLDSPNMWLQTPDTFMLDDESMMFANNDYDYKLFDEEENEWENMHTTSLWDP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0061 197 MobiDBLite consensus disorder prediction 106 133 - -
Lal16g0061 197 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Lal16g0061 197 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lal16g0061 197 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Lal16g0061 197 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Lal16g0061 197 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Lal16g0061 197 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lal16g0061 197 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lal16g0061 197 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Lal16g0061 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 196 - -
Lal16g0061 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 8 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0061 Lal-Chr16 372052 372645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0061 15 197 AP2-EREBP Transcription Factor Family AT1G71450 55.191 3.90e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0061 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0061 - - gmx:100801245 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0061 16 372052 372645 Lal15g0040 15 310206 310760 LSH