Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0033 ATGGATTCAGAAGGTGAAGGAGTTAGGACACCAAAGAGGGAATTGGAAGCAGTGGGAGCTCTAAATTCAAAGATGAAGGGTGCTGGAAATCAAAGCAGTAAAGATATGATTTTCAGAGCTGATAAAATTGATCTGAAAAGTTTGGATGCTCAGCTTGAAAAGCACTTAAGCCGGGTTTGGTCAAGAAACAATGTTGATACAAAAAGGCCTAAAGAAGAGTGGGAGATTGATTTGGCCAAATTGGATTTACGATATGTCGTAGCTCATGGAGCATATGGTACTGTTTATAGGGGCACATATGATATCCAAGACGTTGCAGTGAAAGTTTTGGACTGGGGTGAGGATGGTGTTGCCACTACTGCAGAGACTGCTGCATTACGAGCATCTTTTAAGCAAGAAGTTGCTGTCTGGCACAAACTTGATCACCCAAATGTCACAAAATTTGTCGGAGCCTCAATGGGCACTTCAAATCTTAAGATTCCTTTGAAAAATCCATCGAACGGTGCTCAAGATTCTCTTCCTTCAAGGGCATGTTGTGTTATCGTTGAGTTTGTCGCTGGTGGCACCCTAAAACAGTACTTGATAAGAAATAGGAGGAAGAAACTTGCATATAAAATTGTGAATTTACGACCAGAAATCCCGCGGTGTTGTCCTAGTGCTTTAGCGAATATAATGCGGAAATGTTGGGATGGGAATCCAAACAAGCGCCCTGAAATGGAGGAGGTGGTGAGAATGCTGGAAGCACTTGATACAAGCAAAGGTGGTGGAATGATACCAGAAGATCAGGCTACAGTGGTAACATGGTATTCATTAATTGCGGGTTTTGATAGGGATGGTGATTTGGAATTAGCTTGGGGGATCTTTGATGAGATGCCTGAGAGTGACTCTTTATCTTGGAACACTATGATTGTTGCCTTGGTTCAAGAGGCGTGTTTGAGGAAGCAGTGGAGCTATTCAGCGATGCAAAACCAGCGGATTTGA 981 0.4281 MDSEGEGVRTPKRELEAVGALNSKMKGAGNQSSKDMIFRADKIDLKSLDAQLEKHLSRVWSRNNVDTKRPKEEWEIDLAKLDLRYVVAHGAYGTVYRGTYDIQDVAVKVLDWGEDGVATTAETAALRASFKQEVAVWHKLDHPNVTKFVGASMGTSNLKIPLKNPSNGAQDSLPSRACCVIVEFVAGGTLKQYLIRNRRKKLAYKIVNLRPEIPRCCPSALANIMRKCWDGNPNKRPEMEEVVRMLEALDTSKGGGMIPEDQATVVTWYSLIAGFDRDGDLELAWGIFDEMPESDSLSWNTMIVALVQEACLRKQWSYSAMQNQRI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0033 326 MobiDBLite consensus disorder prediction 1 30 - -
Lal16g0033 326 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 208 269 - -
Lal16g0033 326 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 12 207 - -
Lal16g0033 326 TIGRFAM PPR: pentatricopeptide repeat domain 266 295 IPR002885 -
Lal16g0033 326 Gene3D Transferase(Phosphotransferase) domain 1 177 262 - -
Lal16g0033 326 Gene3D Phosphorylase Kinase; domain 1 70 163 - -
Lal16g0033 326 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 208 269 - -
Lal16g0033 326 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 207 - -
Lal16g0033 326 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Lal16g0033 326 SUPERFAMILY Protein kinase-like (PK-like) 86 248 IPR011009 -
Lal16g0033 326 Pfam Protein tyrosine and serine/threonine kinase 84 205 IPR001245 GO:0004672|GO:0006468
Lal16g0033 326 Pfam Protein tyrosine and serine/threonine kinase 210 246 IPR001245 GO:0004672|GO:0006468
Lal16g0033 326 ProSiteProfiles Protein kinase domain profile. 81 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0033 Lal-Chr16 217871 222266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0033 208 262 MAP Kinase Kinase Kinase AT3G22750 78.182 6.94e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal16g0033 PK_Tyr_Ser-Thr 7.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0033 - - gmx:100803917 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0033 16 217871 222266 Lal15g0018 15 182359 185052 LSH