Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0016 ATGGATATGGAGAGGGGTCCAGATCAGTGCCTCCCTGAGAGGAAAGGGCAGAAGAGGAAGCAACTTCACCAACAAGAATTCGAATTCCCCTCTCAGATCTGCATCTCCGAACAAGTTTCCATCCTCAATTCTACTTTCTCTTCCAATCAATCTCATCGCTCTGCTGCTAAGCGTGCCACTCACCTCCTCGCCGATCTCGCCAAAAACGAGGATGTAGTTAACGCCATTGTTGATGGAGGAGCAATCCCGGCTCTGGTTATGCATCTTCAAGCACCTCCGTTGGATGAAAATGATCGTTTTCAGAAGCCATTGCCCTTTGAGCACGAGGTCGAGAAAGGGAGCGCATTCGCACTTGGTCTTCTTGCCGTCAAGCCAGAACATCAACAATTGATTGTTGACAATGGTGCCTTAAAACACCTCGTTGATCTTTTGAAGAGGCACGACAATGTCCTAACATCTCGTGCTGTTAATAGTCTCATCCGTAGGGCTGCAGATGCCATTACTAATCTTGCTCACGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGCGGGATTCCTCCTCTTGTTGACTTGCTTGAAGTCGCTGATACGAAGGTACAAAGAGCAGCAGCCGGTGCATTACGGACCCTGGCTTTTAAAAATGATGAAAATAAAAATGAGATTGTTGAATGTAATGCTCTTCCAACTTTGATCTTAATGCTTCGTTCGGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATCGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGTGCTTTACAACCTGTTATTAGATTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCTTTGTTACTTGGACAATTTGCTGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCAGTCAGGCCTCTGATAGAGATGCTTCAGTCCCCTGACGTACAGCTCAGAGAAATGTCTGCCTTTGCACTGGGGAGATTGGCTCAGGACTCACATAACCAAGCAGGTATTGCACATGATGGTGGCTTAATGCCATTGCTGAAGCTTCTCGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGAAGGAGAGTTTATAGTTCAAGCAACTAAGGATTGTGTTGCTAAGACATTAAAAAGATTAGAAGAAAAGATTAGTGGACCTGTGCTGAACCATTTGTTACAGCTCATGCGAGACTCAGAAAAGGCTTTCCAAAGACGTGTTGCTTTGTCTCTTGCTCATCTTTGTTCAGCGGCTGATCAGAGAAAAATATTTATTGATCACCATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCCAGCCCTAAGCAGCAACTTGATGGTGCAGTGGCTTTATGGAAGTTGGCCAATAAAGCTATGACCTTGTCTCCCATCGATGCTGCCCCCCTTCTCCAACACCCCAGGTCACAAGGCAAGCAACCTTACTATCGCGTCGAGGCTTCCCCTATTGTCTATTTAGGGGAGCAGTATGTAAACAACTGTAGTGTGTCTGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGCCTACTTGCGTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGATGCAAGGGACATAGAGATTCCAAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCTTCATATTGCCCAAGATCTCCTTCGAGCAGCTGATCAATATCTTCTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCGCTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCTTTTAATGCCATATCGTTGAGGCACACATGCATCATTTTTATTTTGGAGCAATTTGATAAATTGAGTGCAAGGCAAGGACACTCTCTTTTGATCCAGCGTGTAATGCCAGAGATTCGCAATTACTTTGTTAAAGTTCTTACAAAGACAAATTCTCGCATCCAGCCATAG 2130 0.4413 MDMERGPDQCLPERKGQKRKQLHQQEFEFPSQICISEQVSILNSTFSSNQSHRSAAKRATHLLADLAKNEDVVNAIVDGGAIPALVMHLQAPPLDENDRFQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHDNVLTSRAVNSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVDLLEVADTKVQRAAAGALRTLAFKNDENKNEIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIRLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDSHNQAGIAHDGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQEGEFIVQATKDCVAKTLKRLEEKISGPVLNHLLQLMRDSEKAFQRRVALSLAHLCSAADQRKIFIDHHGLELLIGLLGSSSPKQQLDGAVALWKLANKAMTLSPIDAAPLLQHPRSQGKQPYYRVEASPIVYLGEQYVNNCSVSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLHIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCIIFILEQFDKLSARQGHSLLIQRVMPEIRNYFVKVLTKTNSRIQP 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0016 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 135 185 IPR000225 GO:0005515
Lal16g0016 709 SUPERFAMILY ARM repeat 38 160 IPR016024 -
Lal16g0016 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 352 394 IPR000225 GO:0005515
Lal16g0016 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 704 - -
Lal16g0016 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 220 IPR000225 GO:0005515
Lal16g0016 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 311 353 IPR000225 GO:0005515
Lal16g0016 709 Gene3D - 283 512 IPR011989 -
Lal16g0016 709 Pfam BTB/POZ domain 536 638 IPR000210 GO:0005515
Lal16g0016 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 227 269 IPR000225 GO:0005515
Lal16g0016 709 SMART BTB_4 543 640 IPR000210 GO:0005515
Lal16g0016 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 704 IPR044282 -
Lal16g0016 709 Gene3D - 157 282 IPR011989 -
Lal16g0016 709 Gene3D - 23 156 IPR011989 -
Lal16g0016 709 Pfam Armadillo/beta-catenin-like repeat 216 255 IPR000225 GO:0005515
Lal16g0016 709 Pfam Armadillo/beta-catenin-like repeat 181 213 IPR000225 GO:0005515
Lal16g0016 709 Pfam Armadillo/beta-catenin-like repeat 300 339 IPR000225 GO:0005515
Lal16g0016 709 CDD BTB_POZ_ARIA_plant 530 645 - -
Lal16g0016 709 Gene3D Potassium Channel Kv1.1; Chain A 516 669 IPR011333 -
Lal16g0016 709 SUPERFAMILY ARM repeat 158 496 IPR016024 -
Lal16g0016 709 SUPERFAMILY POZ domain 535 637 IPR011333 -
Lal16g0016 709 ProSiteProfiles BTB domain profile. 543 610 IPR000210 GO:0005515
Lal16g0016 709 SMART arm_5 174 214 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 216 256 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 341 381 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 124 172 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 69 123 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 258 298 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 456 496 IPR000225 GO:0005515
Lal16g0016 709 SMART arm_5 300 340 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0016 Lal-Chr16 112940 121796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0016 174 400 U-box Gene Family AT5G67340 28.070 1.10e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal16g0016 BTB 2.4e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0016 - - gmx:100812456 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0016 16 112940 121796 Lal15g0016 15 159895 166936 LSH