Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0012 ATGAACTCATCAATCTCGGACCCACCCTTTCATGAGGCATACAAGAGTCTATTCGAGAAGATCATAAGTAATAATGAAGAGATTAATGGTCTTAACAATGAGGTTATGGTTGAATGCGAGCTTCCATTGATCAATATAAAGGTTTTAGAAGAGAGTGATCCAGTGGCGAGGGAAGAGTGCAAGTCCAACATAGCTAGGGCTTCACAACAATGGGGTTTCTTCCAGGTTATAAACCATGGGATTTCAAGTGATATTTTGAAAAGATTGAGGTGTGAACAAGAGAAGTTGTTTAGGAAACCGTTTCATAATAAGACTAAAGAGGATGAGTTCTTCAACTTCTCTGCAGGTAGCTATCGTTGGGGATCACCCACTGCCACATGCATTACACAGTTGTCTTGGTCAGAAGCTTTTCATATTCCTTTAACCGATATACTCTACTCCTCCAATTCATCATCATCCAACTCTCTCAGTTCAACAATGGAACAATTTGCTAGCACAGTTTCAACACTTGCACAAACGTTAGCTGATATTCTGGCAGAGAAAATGGGCCATAAGTCAAATTTGTTTAAGGATAATTGCTTGTCCAACACGTGTTATCTTCGATTGAACAGATACCCTCCTTGCCCAATTGCTTCTGAGATTCATGGTCTAATGCCACATACTGATACTGACTTCCTCACTATATTGTATCAAGATCAGGTTGGTGGTTTGCAATTGGTCAAAGATATGAAATGGATAGCAGTTAAACCAAACCCTCATGCTCTTATAATCAACATCGGTGACTTATTCCAGGCATGGAGCAACGGGGTGTACAAGAGTGTTGAGCATAGAGTTGTGACGAACCCCAAAGTGGAAAGGTTCTCTACGGCTTATTTCTTATGCCCTTCAAATGACACTGTGATTGAAAGCTGCATAGAGCCTTCTGTTTACAGGAAATTTAGCTTTCAGGAGTACAAAAAACAAGTTCGTGATGATGTTCAGATGCTCGGTTCCAAAATAGGCCTACCCAGACCTTTGGTTTTGATTTTAATTTTAATCACATTTTGTTTGCTCATCAACCTCAATGATTCCTTGCCATCCTACAACTACTTCCATATCTGTGAAGATCCATTAGATAATGCAACTGATCCTAATTTCCAATCCAATATCTCTCCCCTCTTGGATTTTATATCTTCAAAAGCTTCCTTCCACAGCTTCTACAATGATAGTATTATTATTAGTAGTAGTAGTAGAATCTATGCCCTTTTTCTATGCCGGGGTGCTGTTTCAAATAACACATGTCAAAACTGTACCAGAACTGCAAGTCAAGAAATCAGAACCCAATGTGCATCTAACACAAGTGCAATCATCTGGTATGACACATGCATGCTTCGATACTCCAACAAAAACTTCTTCGGAGAGGAACAAACTTCACCACTAGCATTCACTGGGAACATCACAAACACAACAACTCCTTCAGCCATTCAAGCTTATAGGGATGAACAAACACTGATGTATCAACTAATAAAAGAAGCCTCAAGTACGGATATGCTTTTCAAAACAGGGAAATCTGTGGGGGGAAATGAGTCTGAAAGTGGATATGGGTTGGTTCAGTGCACAAGAGATATAAATAGCAGTTCATGTCACTCTTGTTTGCATCAGTTGATGAAGGAGGCTGACAAGTGTTGCCAACACAAGTTTGGGTGGCGTGTAATGGCTCCGAGTTGCAATATAAGGTATGAGAGGTATAACTTCTATAACCAAACTTGTGCACCACCAGAGTCTCTTCCACCACTGCCACATTCTCAAGGGAAGAGAAGGTACTTAAAGGCAAAATTTCTAGCCATTCATGTCATACCAATTGCAGTTGTGGCTGCTCTTACGGTGTTAGTGTGGTTTTCATGTTTGCACTGGAAGAAAAGAAAAATAGGAAGAACAGATGATGAAATTCTAGTTAAGAGTTTGAAAAGCTCAAGTAGACACTTGAAGGAACAAGGACATGGGGACAATAGTGGAGACATGCATTACTTTAGTTTGAGCACCATCAAGGTTGCTACCAACTATTTCTCTGACGACGCTAAGCTTGGGGAAGGTGGATTTGGTCCTGTTTTCAAGGGGAAGTTGAGCAATGGCAGGGAAATAGCAGTTAAAAGGCTTTCATTCAAATCAACACAAGGCCTTGAAGAATTCAAGAACGAAGTGCTGTTAATCGCTAAACTTCAACACAGAAATCTTGTGAAGCTCCTGGGATGCTGCGTTGGTGAAAATGAAAAGCTTCTTGTCTATGAGTACATGGCCAATACTAGTCTTGATGCCTTCCTGTTTGATCCAATCAAACGTGTAGAGCTGGATTGGTCTAAAAGGGTGAGGATTATTAATGGAATTGCAAAAGGCCTTGTGTATTTACACGAGGACTCACGCCTCAAAATTATCCATAGGGATCTAAAAGCTAGCAATGTGTTGCTGGATGAAGAGATGAACCCAAAGATTTCAGATTTTGGGACTGCTAGGATGTTTGGTGGCAATCAAAATGAAGCAAGCACTGATAAAGTTGTTGGAACATATGGTTATATGGCACCAGAATATGCATTGGAAGGATTGTTTTCTATTAAGTCTGATGTTTACAGCTTTGGAGTTTTGATGCTAGAAATTATGAATGGAAGAAAGAACAGTGGCTTCTACCTACAGGAGCGTGGTTGTGGTGAAAGCCTTCTATCCTATGCATGGCGACTATGGAGTGTAGGCAAGGGAGTGGAATTTATGGACCCAATGTTGGTGATATCTTGCCCCAAAAATCAGGCATTAAGATGGATCCATATTGGTTTGTTGTGTGTTCAAGAAAGACCAAAGGATAGACCAATCATGTCATCAGTTATTGTAATGCTTGGGAGTGCTATCAATCTTCCTTTACCATCTGCACCTCCCTTTTCTGTAGGCAGATATTTTGCATCTGACCAATCTTCAACATCTGCTAAAGATATTGAATTCCAACCATCACCTGGAAGATATTGA 2991 0.4032 MNSSISDPPFHEAYKSLFEKIISNNEEINGLNNEVMVECELPLINIKVLEESDPVAREECKSNIARASQQWGFFQVINHGISSDILKRLRCEQEKLFRKPFHNKTKEDEFFNFSAGSYRWGSPTATCITQLSWSEAFHIPLTDILYSSNSSSSNSLSSTMEQFASTVSTLAQTLADILAEKMGHKSNLFKDNCLSNTCYLRLNRYPPCPIASEIHGLMPHTDTDFLTILYQDQVGGLQLVKDMKWIAVKPNPHALIINIGDLFQAWSNGVYKSVEHRVVTNPKVERFSTAYFLCPSNDTVIESCIEPSVYRKFSFQEYKKQVRDDVQMLGSKIGLPRPLVLILILITFCLLINLNDSLPSYNYFHICEDPLDNATDPNFQSNISPLLDFISSKASFHSFYNDSIIISSSSRIYALFLCRGAVSNNTCQNCTRTASQEIRTQCASNTSAIIWYDTCMLRYSNKNFFGEEQTSPLAFTGNITNTTTPSAIQAYRDEQTLMYQLIKEASSTDMLFKTGKSVGGNESESGYGLVQCTRDINSSSCHSCLHQLMKEADKCCQHKFGWRVMAPSCNIRYERYNFYNQTCAPPESLPPLPHSQGKRRYLKAKFLAIHVIPIAVVAALTVLVWFSCLHWKKRKIGRTDDEILVKSLKSSSRHLKEQGHGDNSGDMHYFSLSTIKVATNYFSDDAKLGEGGFGPVFKGKLSNGREIAVKRLSFKSTQGLEEFKNEVLLIAKLQHRNLVKLLGCCVGENEKLLVYEYMANTSLDAFLFDPIKRVELDWSKRVRIINGIAKGLVYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARMFGGNQNEASTDKVVGTYGYMAPEYALEGLFSIKSDVYSFGVLMLEIMNGRKNSGFYLQERGCGESLLSYAWRLWSVGKGVEFMDPMLVISCPKNQALRWIHIGLLCVQERPKDRPIMSSVIVMLGSAINLPLPSAPPFSVGRYFASDQSSTSAKDIEFQPSPGRY 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0012 996 Gene3D - 363 464 IPR038408 -
Lal16g0012 996 Gene3D - 473 578 IPR038408 -
Lal16g0012 996 SUPERFAMILY Clavaminate synthase-like 38 322 - -
Lal16g0012 996 ProSiteProfiles Gnk2-homologous domain profile. 361 464 IPR002902 -
Lal16g0012 996 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 295 IPR005123 -
Lal16g0012 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Lal16g0012 996 Gene3D Phosphorylase Kinase; domain 1 654 757 - -
Lal16g0012 996 Pfam Salt stress response/antifungal 374 461 IPR002902 -
Lal16g0012 996 Pfam Salt stress response/antifungal 490 576 IPR002902 -
Lal16g0012 996 Pfam Protein tyrosine and serine/threonine kinase 686 953 IPR001245 GO:0004672|GO:0006468
Lal16g0012 996 PANTHER PROTEIN KINASE DOMAIN 358 980 - -
Lal16g0012 996 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 358 980 - -
Lal16g0012 996 Gene3D - 39 332 IPR027443 -
Lal16g0012 996 SMART serkin_6 682 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0012 996 SUPERFAMILY Protein kinase-like (PK-like) 664 974 IPR011009 -
Lal16g0012 996 ProSiteProfiles Gnk2-homologous domain profile. 470 578 IPR002902 -
Lal16g0012 996 Gene3D Transferase(Phosphotransferase) domain 1 758 961 - -
Lal16g0012 996 ProSiteProfiles Protein kinase domain profile. 682 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0012 996 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 139 IPR026992 -
Lal16g0012 996 CDD STKc_IRAK 688 955 - -
Lal16g0012 996 Pfam 2OG-Fe(II) oxygenase superfamily 200 295 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0012 Lal-Chr16 86783 96082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0012 350 983 Receptor kinase-like Gene Family AT4G05200 42.598 2.79e-165 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal16g0012 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0012 - - lang:109348525 1239.94