LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0005	ATGACGAGTGTGAGTGTGGGGAGAGAGTTGTCGAATCCTCCATTGGATGGAATATCTAACCTTCGATTCTCAAATCACAGCGATCTCCTTCTTGTTTCTTCATGGGACAAGAGTGTCCGATTGTATGATGCCACCGCTAATATCCTCAGATCTCAATTCCTTCATTCTGGTCCAGTCCTTGATTGTTGTTTCCATGATGATTCTTCTGGTTTCAGTGCCTCCTCTGATAACACTGTTAGGCGACTGGTTTTCAACTCTAATAAGGAGGATATTTTGGGAACCCATGATGCTCCTGTTCGTTGTCTCGACTACTCCTATGCTGCAGGCCAATTGGTCACTGGAAGTTGGGACAAAACAATAAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAACATCACACTCTTGTTGGCACATATCCACAACCTGAGCGTGTTTACTCTCTATCTCTTGTTGGTCATCGCCTCGTTGTAGCAACCGCCGGAAGGCATGTTAATGTTTATGATCTGAGGAACATGTCTCAACCTGAGCAACGAAGGGAATCATCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACTGGATATGCACTCAGTTCTGTCGAAGGGCGGGTTGCCATGGAGTTCTTTGACCTTTCCGAGCCTAGTCAAGCAAAAAAATATGCTTTCAAGTGTCACAGAAAGTCTGAAGCTGGAAGGGACATTGTGTATCCTGTAAATGCTATGGCATTCCACCCCATATATGGTACATTTGCCACTGGAGGTTGTGATGGTTATGTTAATGTTTGGGATGGAAGTAACAAGAAGAGACTGTACCAGTACTCAAAATATCCAAGTAGCATTGCTGCACTTTCATTTAGCAGAGATGGACGCCTCCTTGCTGTTGCATCAAGTTACACATTTGAAGATGGACCAAAACCGCATGAACAAGATGCTATCTATGTTCGTAGTGTAAACGAGATAGAGGTCAAGCCAAAACCCAAAGTCTATGCCAATCCTCCAGTGTGA	1017	0.4435	MTSVSVGRELSNPPLDGISNLRFSNHSDLLLVSSWDKSVRLYDATANILRSQFLHSGPVLDCCFHDDSSGFSASSDNTVRRLVFNSNKEDILGTHDAPVRCLDYSYAAGQLVTGSWDKTIKCWDPRGASGQHHTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEPSQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGYVNVWDGSNKKRLYQYSKYPSSIAALSFSRDGRLLAVASSYTFEDGPKPHEQDAIYVRSVNEIEVKPKPKVYANPPV	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g0005	338	Pfam	WD domain, G-beta repeat	17	43	IPR001680	GO:0005515
	Lal16g0005	338	Pfam	WD domain, G-beta repeat	226	267	IPR001680	GO:0005515
	Lal16g0005	338	Pfam	WD domain, G-beta repeat	91	124	IPR001680	GO:0005515
	Lal16g0005	338	Gene3D	-	6	332	IPR015943	GO:0005515
	Lal16g0005	338	PANTHER	MITOTIC CHECKPOINT PROTEIN BUB3.2	5	333	-	-
	Lal16g0005	338	PRINTS	G protein beta WD-40 repeat signature	30	44	IPR020472	-
	Lal16g0005	338	PRINTS	G protein beta WD-40 repeat signature	111	125	IPR020472	-
	Lal16g0005	338	PRINTS	G protein beta WD-40 repeat signature	254	268	IPR020472	-
	Lal16g0005	338	PANTHER	MRNA EXPORT FACTOR AND BUB3	5	333	-	-
	Lal16g0005	338	SUPERFAMILY	WD40 repeat-like	15	301	IPR036322	GO:0005515
	Lal16g0005	338	SMART	WD40_4	219	267	IPR001680	GO:0005515
	Lal16g0005	338	SMART	WD40_4	45	83	IPR001680	GO:0005515
	Lal16g0005	338	SMART	WD40_4	270	320	IPR001680	GO:0005515
	Lal16g0005	338	SMART	WD40_4	85	124	IPR001680	GO:0005515
	Lal16g0005	338	SMART	WD40_4	132	168	IPR001680	GO:0005515
	Lal16g0005	338	SMART	WD40_4	3	43	IPR001680	GO:0005515
	Lal16g0005	338	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	92	124	-	-
	Lal16g0005	338	ProSiteProfiles	Trp-Asp (WD) repeats profile.	92	124	IPR001680	GO:0005515
	Lal16g0005	338	ProSiteProfiles	Trp-Asp (WD) repeats profile.	242	276	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0005	Lal-Chr16	42183	44998	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g0005	102	307	U-box Gene Family	AT2G33340	25.837	1.36e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0005	K02180		-	gmx:100818414	637.491