Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0001 ATGGAAGAAGATGAAGAAGTGGTGTCTCTGTCTTCTTCTTCTGATTTAGGCGATGACGAATACTCCGTCGAAGATGATAAAGAACGCAAATCTCAGAATGTCGATGCTCTCCTCAGTGGAAAGTTGATAGTGAAGAGGCAATCGTTGGTACCGCAAGTTCTATCAGTTCCACTTTGTAGAAAACCCTTCAAACCTCCATGCTCCTCTTCCAATTACAACGAACACCTTAGTCGGAGGCTTTCCCTCCGTAAAAGGTTTGTTCCTTGGAGACAACAACAAGCTTCTATTTTGCTTGAAACCACCAACATACACTTCAATAATATAGACCTGGTACAAAAACAAGAGCAGGATGAGAAACTTTGTTTGCCCCTTAGGATTGATCCTCTAATACTGTGGGACCCTCCTCAAGGTCATGACCACCAACCAATTTCTGTTCACCCTTTGCTTGTTCAATTCCTTCGTCCTCATCAGAGGGAGGGAGTTCAGTTTATGTTTGATTGTGTCTCTGGCCTACGTAGTTCTGCCAATATCCATGGATGCATTTTGGCTGATGATATGGGTTTGGGAAAGACATTGCAATCCATCACGTTACTTTATACTCTACTTTCTCAAGGCTTTGATGGCAATCCAATGGTTAGAAAGGCCATCATTGTCACCCCTACCAGCCTTGTCACTAATTGGGAAGCTGAAATCAATAAGTGGCTTGGATCTAGAATTCATCTTGTTGCTATTTGTGAAAGCACAAGAGAAGATGTCATCTCTGGGATTCACAATTTTACAAGTACCCGCACCACATTACAGGTGCTGATTGTTTCATATGAGACATTTAGAATGCACTCTTCAATTGTCAGCTCCACTGACTCTTGTGACCTTCTTATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACCAACCGGACATTAGCTGCTCTACCATGCAAACGTAGAATTTTGTTGTCCGGAACTCCTTTGCAGAATGACTTAGAAGAATTCTTTGCGATGGTTAACTTCACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGGTACTATGAGGCGCCAATTATTTGCGGAAGAGAACCTACTGCCACTGCAGAAGAGAAGAAGCTAGGTGCTGAACGCTCCACAGAATTAAGTATCAAAGTTAATCAGTTCATATTAAGAAGAACTAATGCATTATTATCGAATCACTTGCCACCAAAGATAATTGAAGTTGTTTGCTGCAAGTTGTCTCCACTACAGTCAGAGCTATATAAACATTTTATACAGTCGAAAAACGTTAAACGGGTAATTACTGAAGAAGTGAAGCGATCCAAGATTTTGGCCTACATAACCGCTCTCAAGAAGTTGTGCAATCATCCAAAACTTATATATGATACCATCCGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGCATTCGTTTTTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACCGGAGGGAATGGAGCTTGGGTTGAACTATCTGGGAAAATGCATGTCTTAGGAAGATTACTTGCTCATTTACGTCAGAGGACAAATGATCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTCGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCATTTGAGACTTGATGGCACTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGACCCATCTAAGGATGAATTTGTTTTTCTGTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGACCCGGATTGGAATCCAGCAAACGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGGCAGAAAAAGAGAGTTTATGTTTATAGATTTTTGACTGCTGGAACAATTGAAGAAAAGGTCTATCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAAGTCATTCAACAGGAGCAAACAGATAGCCTTGTGGCACAGGGTAACTTACTTTCGACAGAGGATCTTCGTGATTTATTCACTTTTCATGAGAGCATCAAGTCAGAGATCCATGAAAAGATGCGATGCAAACGGTGCCCAACATACGATGGGACTGAAAGCACTGATGAGAAATATGCGGCATCTCAGTCAACAATAATGAATTGTGAACCCGATGAAGAAACCTGTGATATAGGTGGATTTGCAGGAATTGCGGGCTGCTTAGAGAAGTTAAAAAGATCAGAGAAGCAGGTTGGGAGCCCATTGGAAGAAGATTTGGGTAGCTGGGGACATCATTTTTTCCCAACTTCTGTCCCAGATGCTATCCTTCAGGCTTCAGCGGGTGATGAGGTGAGTTTTATTTTTACAAACCAAGTTAACGGAAAGCTGGTCCCAATTGAGTCCACCATCACTCCGGAGTTGCAACAAAAAGAACCAAATAATGAAATACTCCTCAAGTCAAAGCTGAACGTCAGACATTCTTTACATAACAAACTACCACGACGGGTACGGGGTGTTGCTACTAGTAGTACAACATCTTCCTTTCTTAAACCTTCTTTGATTAAGGAAGCACTACATTCTGTCAGAATTACAAAGAATATTTCAGCATCTCCTGTAATTAATTCATTACCACTGAAAAGATCATGTCCTACTAATATAAGTGATGATGATGATCTCGATTAA 2682 0.4154 MEEDEEVVSLSSSSDLGDDEYSVEDDKERKSQNVDALLSGKLIVKRQSLVPQVLSVPLCRKPFKPPCSSSNYNEHLSRRLSLRKRFVPWRQQQASILLETTNIHFNNIDLVQKQEQDEKLCLPLRIDPLILWDPPQGHDHQPISVHPLLVQFLRPHQREGVQFMFDCVSGLRSSANIHGCILADDMGLGKTLQSITLLYTLLSQGFDGNPMVRKAIIVTPTSLVTNWEAEINKWLGSRIHLVAICESTREDVISGIHNFTSTRTTLQVLIVSYETFRMHSSIVSSTDSCDLLICDEAHRLKNDQTITNRTLAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPTATAEEKKLGAERSTELSIKVNQFILRRTNALLSNHLPPKIIEVVCCKLSPLQSELYKHFIQSKNVKRVITEEVKRSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGNGAWVELSGKMHVLGRLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGTTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLTAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNLLSTEDLRDLFTFHESIKSEIHEKMRCKRCPTYDGTESTDEKYAASQSTIMNCEPDEETCDIGGFAGIAGCLEKLKRSEKQVGSPLEEDLGSWGHHFFPTSVPDAILQASAGDEVSFIFTNQVNGKLVPIESTITPELQQKEPNNEILLKSKLNVRHSLHNKLPRRVRGVATSSTTSSFLKPSLIKEALHSVRITKNISASPVINSLPLKRSCPTNISDDDDLD 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0001 893 MobiDBLite consensus disorder prediction 1 30 - -
Lal16g0001 893 Pfam Helicase conserved C-terminal domain 514 621 IPR001650 -
Lal16g0001 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 778 IPR027417 -
Lal16g0001 893 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 344 IPR014001 -
Lal16g0001 893 PANTHER SNF2/RAD54 FAMILY MEMBER 47 786 - -
Lal16g0001 893 Gene3D - 394 702 IPR027417 -
Lal16g0001 893 SMART ultradead3 149 352 IPR014001 -
Lal16g0001 893 SMART helicmild6 538 622 IPR001650 -
Lal16g0001 893 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 672 IPR001650 -
Lal16g0001 893 CDD SF2_C_SNF 505 633 - -
Lal16g0001 893 Gene3D - 416 685 - -
Lal16g0001 893 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 47 786 - -
Lal16g0001 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 394 IPR027417 -
Lal16g0001 893 Pfam SNF2-related domain 156 462 IPR000330 GO:0005524|GO:0140658
Lal16g0001 893 Gene3D - 131 393 IPR038718 -
Lal16g0001 893 CDD DEXHc_RAD54 153 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0001 Lal-Chr16 19645 27648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0001 502 680 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.03e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal16g0001 SNF2_N 2e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0001 K10875 - gmx:100781631 1345.87