LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g1616	ATGTCATCAAGATCATACGCTAATCTTTTAGACTTAGCTGGTGGAGGAGGCTTGCTTGATATTCCGCACACCCCAAGAACTCTTCCAAGGATTATGACAGTTCCTGGAATTATTTCTGACTTGGATGGTTATGGTTGTAATGACGGGGAATCAGACATTAGTTCTACTGGATGCCGAGAGCGGAAAATCATTGTTGCAAACATGCTGCCAATTCAGGCTAAACAAGATACAGAGACCGGAAAATGGCGCTTCAGTTTCGACGCGGATTCAATTTTATTACAGTTAAAAGATGGTTTTTCTTCTGATACTGAGGTAATTTATGTGGGTTCTCTCAAGGTTGACATAGATTCTAGTGAGCAGGAAGAAGTTTCACAGAGATTACTGGATGACTTTAATTGTGTACCTACCTTTCTACCCTATGATCTCCAGGAGAAATTCTATCTTGGCTTTTGTAAGCAACAGATTTGGCCTCTCTTTCATTATATGCTACCCATATGCCCAGATCATGGTGATCGTTTTGACCGTGTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAAGTTATGGAAATAATTAACCCTGACGAGGATTTCGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCTACCTTCTTGAGGAAGCGGTTTAATCGCGTTAAACTTGGATTCTTTCTTCATAGTCCTTTCCCTTCATCTGAAATTTATCGAACTTTGCCAGTAAGGGATGAGATTTTGAGGGGCTTGTTGAATTCTGATTTAATCGGCTTTCATACATTTGATTATGCTCGCCACTTCCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGATTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGTCGCACTATCTTCATCAAAATTTTGCCTATAGGGATTCATATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTGTACAGCTGCTAAACTAAAAGAGGTTCAAGAAGAGTTTAAGGGTAAGAAGGTGATTCTTGGTGTTGATGACATGGATATTTTCAAGGGCATCAGCCTGAAATTCTTAGCTTTGGAGCAGCTGCTGCAGCAGAAGCCAGATTTACAGGGTAAAGTTGTCTTAGTTCAAATTGTAAATCCTGCAAAGGGTTCAGGGAAGGATGTTCAGGAAGCAATGAAGGAAACATATATAATTGCCCAGAGGATCAATGATACTTATGGATCAAATCATTACCAGCCGGTCATTCTCATTGACCGCCCTGTTCCACGTTTTGAGAAGACTGCCTATTATGCTGTAGCAGAATGTTGCATTGTCAATGCTGTAAGGGATGGCATGAACTTAGTGCCATACAAATATATTGTCTGCAGACAGGGAACTGCAAAAATGGATTTAGCATTGGGAAGAAAAAGCGATTCTCCTCGTTCAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCGCCATCTCTGAGTGGAGCGATCAGGGTCAATCCTTGGGATGTAGGTGCTGTTTCCGATGCTCTGTATTCGGCCATTACTATGTGCGATTCAGAGAAGCATTTGCGTCATGAGAAACATTATCGTTATGTTAGTTCTCATGATATGGCATATTGGGCCCGTAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGCTGGGGGATTGGTCTGGGTCTAGGGTTTAGAGTTGTTTCTCTTTCTCATGGTTTTAGGAAGTTGTCCATTGACCATATTGTTTCAGCATACAAAAGAACCAACAAAAGGGCCATTTTTCTTGATTATGATGGCACTATAGTACCAGAATCTTCTTTAAATAAAGCCCCCACTGCTGATGTCATATCCGTACTAAATGCACTGTGCAATGATACTAAAAACATCGTGTTCATTGTTAGCGGGAGGGGAAGAGATTCTCTGAGTGATTGGTTTACTTCATGCAAAATGCTAGGACTTGCAGCTGAACATGGGTACTTTTTAAGGTGGAGTAGAGATTCCGAATGGGAAACTAGCCACTTATCTGTGGACCTTGATTGGAAAAATATGGTGGAACCTGTCATGCAGTCTTATACAGAGGCAACTGATGGATCTAGTATTGAAGTTAAAGAAAGTGCTTTGGTGTGGCATCATCTGGATGCAGACCCTGACTTTGGTTCTTGCCAAGCCAAAGAATTGTTGGATCACCTGGAAAGTGTGCTTGCAAATGAACCAGCAGCAGTTAAGAGAGGCCAGCACATTGTTGAAGTTAAGCCACAGGGAATAAATAAGGGTTTGGTAGCTGAAAAGATTCTTTCGACTATGGTTAATGGCGGTAATTCACCAGATTTTGTTATGTGCATAGGAGATGATAGGTCTGATGAAGACATGTTTGAGAGCATCTTAAGGACGGTTTCAAGCCCATCATTGCCAGCAGCACCAGAGATATTTGCTTGCACCGTAGGTAGTAAGCCGAGCAAGGCCAAGTATTATCTCGATGATACTACCGATGTTATAAAGTTGCTGCAAGGTCTCGCCACTTCATCTAATCCAAAGCCCAAGCATCTTGCCCATTTCCAGGTTTCTTTTGAGAGCACAGTTTGA	2589	0.4156	MSSRSYANLLDLAGGGGLLDIPHTPRTLPRIMTVPGIISDLDGYGCNDGESDISSTGCRERKIIVANMLPIQAKQDTETGKWRFSFDADSILLQLKDGFSSDTEVIYVGSLKVDIDSSEQEEVSQRLLDDFNCVPTFLPYDLQEKFYLGFCKQQIWPLFHYMLPICPDHGDRFDRVLWQAYVSANKIFADKVMEIINPDEDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPIGIHMGRLESVLNLPCTAAKLKEVQEEFKGKKVILGVDDMDIFKGISLKFLALEQLLQQKPDLQGKVVLVQIVNPAKGSGKDVQEAMKETYIIAQRINDTYGSNHYQPVILIDRPVPRFEKTAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAKMDLALGRKSDSPRSSMLVVSEFIGCSPSLSGAIRVNPWDVGAVSDALYSAITMCDSEKHLRHEKHYRYVSSHDMAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSHGFRKLSIDHIVSAYKRTNKRAIFLDYDGTIVPESSLNKAPTADVISVLNALCNDTKNIVFIVSGRGRDSLSDWFTSCKMLGLAAEHGYFLRWSRDSEWETSHLSVDLDWKNMVEPVMQSYTEATDGSSIEVKESALVWHHLDADPDFGSCQAKELLDHLESVLANEPAAVKRGQHIVEVKPQGINKGLVAEKILSTMVNGGNSPDFVMCIGDDRSDEDMFESILRTVSSPSLPAAPEIFACTVGSKPSKAKYYLDDTTDVIKLLQGLATSSNPKPKHLAHFQVSFESTV	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g1616	862	Gene3D	-	722	854	IPR023214	-
	Lal15g1616	862	Gene3D	-	592	708	IPR023214	-
	Lal15g1616	862	Gene3D	Glycogen Phosphorylase B;	316	530	-	-
	Lal15g1616	862	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	594	796	IPR006379	-
	Lal15g1616	862	Pfam	Glycosyltransferase family 20	61	546	IPR001830	GO:0003824\|GO:0005992
	Lal15g1616	862	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	61	550	-	-
	Lal15g1616	862	CDD	GT20_TPS	61	546	IPR001830	GO:0003824\|GO:0005992
	Lal15g1616	862	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED	1	853	-	-
	Lal15g1616	862	CDD	HAD_TPP	594	835	-	-
	Lal15g1616	862	Pfam	Trehalose-phosphatase	596	830	IPR003337	GO:0003824\|GO:0005992
	Lal15g1616	862	Gene3D	Glycogen Phosphorylase B;	50	315	-	-
	Lal15g1616	862	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	853	IPR001830	GO:0003824\|GO:0005992
	Lal15g1616	862	TIGRFAM	T6PP: trehalose-phosphatase	591	841	IPR003337	GO:0003824\|GO:0005992
	Lal15g1616	862	SUPERFAMILY	HAD-like	593	840	IPR036412	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g1616	Lal-Chr15	17993960	17998669	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g1616	1	862	Trehalose Biosynthesis Gene Families	AT1G60140	73.550	0.0	1365

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g1616	K16055		-	gmx:100775779	1561.58