Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1593 ATGAAGGTGGTGGGTAATATGAAGAAGCCAGTGTTCTTGTTGTGGCAGTTTGGAATGACAATGCAACTCTTCTTGCTCATTGCATGTTGTGAGAGGACACCATTTAGAAGTTCAAGCGAAATCAACATATCCGAATCATCACCTCGTAGTCATGGAGTGAAGATGAACATAGAAAAAAATATGCATTTGGTAGTTGACAATGGCATTGTTAAAGTGACATTGTCAATTCCAGAGGGCTATGTCATTGGAATATCATATAATGGAATTGACAATATTCTTGACACTCAAAACAAGGAACATGATAGAGGGTACTTGGACATTTTTTGGAATGTCCCATCACAACACACAATCTATGAGAGGTACATTTTTCTAAGAGGTAATTCGGGATTTTATTCATATATAATATTTGATCGTCCTAAAGGATTACCAGCAGCAGAAGTTGATCAAATTAGGACTGTTTTTAAGCTCCAGGAAAATAGTAATGAAAAAGCAAGTGACAGGTTCAAATACATGGCTATAGCAAATGATAGGCAAAGAAATATGCCAACAATGAGAGATAGAAAATTTGGTGAAGCCTTGGCATACCGTGAAGCAGTTCTATTAACCAATCCATCTGATCCAAAATTGAAAGGAGAGGTGGATGACAAATATCAATATTCATGTGAGAACATAGACAACACTGTACATGGTTGGATTGATGTTGATTCTGATTCACCAGTGGGTTTTTGGATGATAACTCCAAGTAATGAGTTTCGTAATGGTGGACCCATTAAACAAGATCTCACTTCTCATGTTGGCCCTATTACCCTAAGTATGTTTGTGAGCACCCACTATGCTGGTAAAGAGGTAACTATGGAATTTAAAGACGGGGAGACATATAAGAAGGTTTTTGGTCCTATTTTTGTTTACCTTAACTCTGCTTCAACCAAAAACCAAGCACTCTCCCTTTGGTCAGATGCTGTGTTACAGAAATCCAAGGAAGTGAGAAAATGGCCATATGATTTTCCTAAATCAAAAGATTTCTTTCCATCCAATAAACGTGGAACTGTAATGGGAAGATTATATGTTCATGAAAGGTACAACAACATATTTAAGGGTGCTAGTAAGGCTTATATTGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAAAGAAAGCAAGGGCTATCAATTCTGGACACGAGCTAACGGAGCTGGTAGTTTTACAATAAAAAATATTGTACCCGGAGTTTATAATTTATATGCATGGGTTCCCGGCTTCATTGGTGATTACAAATATAATGCTACCATTATCATTAAACCAGGAAGTGTAACCAACTTTAAGAAGTTAGTATACATTCCTCCAAGAAACGGACCAACTCTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTTTATGTACCAGACCCCTACAATAACCTCTTGAACAAATTATACCAAGAACAACCTAAAGAGAAGTTTAGACAATATGGGTTATGGTCACGTTATACTGATTTATACCCAAAGCATGATCTAGTCTACACTGTTGGTGTTAGCAATTTTACTAAGGATTGGTTTTATGCTCAGGTTACAAGAGACACAGGAAAAAATACATATCTACCAACAACATGGGAAATTGTATTTGAACATCAACATGATGTTATTGGTGGCAATTACATGTTACAATTAGCCTTGGCATGTGCTGCTGAAGCTAAACTAGAGGTTCGGGTTAATAACCCTAATGTGAATCGACCCCACTTTAGCACAGGGCTAATACTTGGAGATAATGCCATTGTTAGGCATGGAATCCATGGATTGCATAGGCTATTCAACATTGTTGTTCCAAGTGGTCATTTTGTGAAAGGAAATAACACAATATATTTGAAGCAGATAGAAAACAAAGAACCTTGGCAAGGAGTTATTTCTTCTTATCGCCGCTCCCATTCTTCTGCTCTTGTTATTGGTTCTATACCTATCAGAGAAATCTACAGGTTTCAAGAGTCATTGCAAGATGAAACTGTTAGAATGAGTTGTTTAATTATTCCTGATAAAGCTGAAATTCCTAATGGGTTGGATAAATCCGCTTCTTCTATTGTGCGTGTGAGCTCTGTAGTGATGAGAAAACTTTCAGCACTGCAGTCAACTGACTCTGTTGATGCAATTGCCCTTATGAAAATTCCTGCCAGTTTTTTGGGTGTAGAAGGCAGTCTAAAGAAGGAAGACTGCCCGAAGTGGTTTCCATTGGCACGGCGGATTTTAGTCCTTGATGGGATTCAGGATCCTGGTAATCTTGGTACATTACTCAGATCTGCCGTGGCCTTTAGATGGGATGGAGTTTTTCTTCTTCCTGGCTGCTGTGATCCATTCAATGAGAAAGCTCTCCGAGCTAGCCGAGGTGCCTCCTTTCAGCTCCCTATAGTTTCTGGCAGTTGGAATCATCTTGAAGCTCTGAAAGAAGAATTTCAAATGAAGTTGCTTGCTGGGCATCCAGATCATGAAGGGTTAGGGAAGTGTATTTGTTTGCTTACTCCAACCTTCTGTGATTCTGTATCAAACACGCCATTGTGCTTGGTTTTAGGCAGTGAAGGAAGTGGCCTTTCAGAAAAGTCCCTTCAGGCATGTGAGCTTGTGAGCATTGAAATGGCCGGAGAATATGAGTCACTCAATGTCTCAGTTGCCGGTGGAATTTTCTTGTATATGCTACAGCCAAAGAATAGATGA 2709 0.3917 MKVVGNMKKPVFLLWQFGMTMQLFLLIACCERTPFRSSSEINISESSPRSHGVKMNIEKNMHLVVDNGIVKVTLSIPEGYVIGISYNGIDNILDTQNKEHDRGYLDIFWNVPSQHTIYERYIFLRGNSGFYSYIIFDRPKGLPAAEVDQIRTVFKLQENSNEKASDRFKYMAIANDRQRNMPTMRDRKFGEALAYREAVLLTNPSDPKLKGEVDDKYQYSCENIDNTVHGWIDVDSDSPVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMEFKDGETYKKVFGPIFVYLNSASTKNQALSLWSDAVLQKSKEVRKWPYDFPKSKDFFPSNKRGTVMGRLYVHERYNNIFKGASKAYIGLALPGDAGSWQKESKGYQFWTRANGAGSFTIKNIVPGVYNLYAWVPGFIGDYKYNATIIIKPGSVTNFKKLVYIPPRNGPTLWEIGIPDRSAAEFYVPDPYNNLLNKLYQEQPKEKFRQYGLWSRYTDLYPKHDLVYTVGVSNFTKDWFYAQVTRDTGKNTYLPTTWEIVFEHQHDVIGGNYMLQLALACAAEAKLEVRVNNPNVNRPHFSTGLILGDNAIVRHGIHGLHRLFNIVVPSGHFVKGNNTIYLKQIENKEPWQGVISSYRRSHSSALVIGSIPIREIYRFQESLQDETVRMSCLIIPDKAEIPNGLDKSASSIVRVSSVVMRKLSALQSTDSVDAIALMKIPASFLGVEGSLKKEDCPKWFPLARRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGASFQLPIVSGSWNHLEALKEEFQMKLLAGHPDHEGLGKCICLLTPTFCDSVSNTPLCLVLGSEGSGLSEKSLQACELVSIEMAGEYESLNVSVAGGIFLYMLQPKNR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1593 902 CDD RGL4_M 346 444 IPR029413 -
Lal15g1593 902 Pfam Rhamnogalacturonate lyase family 118 213 IPR010325 -
Lal15g1593 902 Gene3D - 343 442 - -
Lal15g1593 902 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 113 - -
Lal15g1593 902 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 117 643 - -
Lal15g1593 902 CDD SpoU-like_rRNA-MTase 747 897 - -
Lal15g1593 902 Gene3D - 56 323 IPR014718 GO:0030246
Lal15g1593 902 Pfam SpoU rRNA Methylase family 748 895 IPR001537 GO:0003723|GO:0006396|GO:0008173
Lal15g1593 902 CDD RGL4_N 60 313 - -
Lal15g1593 902 SUPERFAMILY Galactose mutarotase-like 60 311 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal15g1593 902 SUPERFAMILY Galactose-binding domain-like 451 637 IPR008979 -
Lal15g1593 902 Pfam Polysaccharide lyase family 4, domain III 454 637 IPR029411 -
Lal15g1593 902 Gene3D - 742 902 IPR029026 -
Lal15g1593 902 SUPERFAMILY Starch-binding domain-like 342 441 IPR013784 GO:0030246
Lal15g1593 902 CDD RGL4_C 456 637 - -
Lal15g1593 902 Gene3D - 452 639 - -
Lal15g1593 902 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 117 643 - -
Lal15g1593 902 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 113 - -
Lal15g1593 902 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lal15g1593 902 SUPERFAMILY alpha/beta knot 744 897 IPR029028 -
Lal15g1593 902 Pfam Polysaccharide lyase family 4, domain II 368 440 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1593 Lal-Chr15 17812860 17822773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1593 50 642 Polysaccharide Lyase AT1G09910 48.585 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1593 K18195 - gmx:100776664 839.336